AMCG00002148 (ephb2,LOC104917933,LOC108439490,LOC102781222)


Basic Information

Item Value
gene id AMCG00002148
gene name ephb2,LOC104917933,LOC108439490,LOC102781222
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5014750 ~ 5022684 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002148
ATGCACCAGGTCAGCAGGACGGTGGACAGCATCACGCTCTCGTGGTCACAGCCCGACCAGCCCAATGGAGTGATTCTGGACTATGAGCTTCAGCACTATGAAAAGGACCAGACCGAATACAACTCCTCGACGGTGCGAAGTCAGACCAACACCGCGGTCATTCGCGGCCTCAAACCCGGCACCATCTACGTGTTCCAGGTGCGGGCGCGGACGGTGGCGGGCTTCGGCCGGTACAGCGGCAAGATGTACTTCCAGACCATGACTGAAGAGGAGTACAAGACCAGCCTGCAGGAGAAGCTGCCCCTCATCATTGGCTCCGCGGCAGCCGGCTTGGTCTTCCTCATCGCCGTCGTGGTCATCGTCATCGTCTGCAATCGGAGGAGGGGCTTTGAGAGGGCAGACTCCGAATACACGGACAAGCTGCAGCACTACACTAGCGGCCACATGACTCCAGGAATGAAGATCTATATCGATCCGTTTACATATGAGGATCCCAACGAGGCGGTGAGGGAGTTCGCCAAGGAAATCGACATCTCCTGCGTGAAGATCGAGCAGGTCATCGGCGCAGtAACCCCATGA

Function

symbol description
ephb2 Predicted to enable amyloid-beta binding activity and transmembrane-ephrin receptor activity. Involved in several processes, including positive regulation of B cell proliferation; positive regulation of gene expression; and regulation of blood coagulation. Located in nucleoplasm and plasma membrane. Implicated in blood platelet disease. Biomarker of cognitive disorder and human immunodeficiency virus infectious disease.

NR:

description
PREDICTED: ephrin type-B receptor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002148 True 579 mRNA 0.58 6 5014750 5022684

Neighbor

gene id symbol gene type direction distance location
AMCG00002146 ephb2 coding upstream 14242 4997545 ~ 5000508 (+)
AMCG00002145 LOC102295218,LOC102203423,LOC101487531,LOC102781222 coding upstream 47030 4963054 ~ 4967720 (+)
AMCG00002143 NA coding upstream 223082 4788512 ~ 4791668 (+)
AMCG00002140 LOC107727752 coding upstream 292819 4690966 ~ 4721931 (+)
AMCG00002133 NA coding upstream 427892 4584435 ~ 4586858 (+)
AMCG00002147 LOC106565894,LOC106582986 coding downstream 11626 5034310 ~ 5036785 (+)
AMCG00002149 lrrc38,LOC107685631,LOC106582984 coding downstream 62211 5084895 ~ 5089872 (+)
AMCG00002150 vps13d coding downstream 105375 5128059 ~ 5196093 (+)
AMCG00002151 NA coding downstream 215627 5238311 ~ 5240700 (+)
AMCG00002159 NA coding downstream 747568 5770252 ~ 5776525 (+)
G121114 NA non-coding upstream 262416 4749128 ~ 4752334 (+)
G121045 NA non-coding upstream 432470 4581973 ~ 4582280 (+)
G121044 NA non-coding upstream 432871 4580854 ~ 4581879 (+)
G120974 NA non-coding upstream 927278 4087159 ~ 4087472 (+)
G120961 NA non-coding upstream 1074034 3940456 ~ 3940716 (+)
G121176 NA non-coding downstream 178718 5201402 ~ 5202462 (+)
G121178 dhrs3 non-coding downstream 180165 5202849 ~ 5204614 (+)
G121187 NA non-coding downstream 204990 5227674 ~ 5228099 (+)
G121198 NA non-coding downstream 221025 5243709 ~ 5275923 (+)
G121228 NA non-coding downstream 451452 5474136 ~ 5570247 (+)
AMCG00002098 NA other upstream 1472573 3533814 ~ 3542177 (+)
G120742 NA other upstream 2055275 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 2160623 2852154 ~ 2854127 (+)
G120518 NA other upstream 3073934 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 4021986 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 196146 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 1563970 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 2371116 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 3716087 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 4821521 9844205 ~ 9851312 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_04686121_04753101 EPHB2, EPHB2B coding CI01000306 null 4686121 ~ 4753101 (+)