AMCG00002153


Basic Information

Item Value
gene id AMCG00002153
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5252375 ~ 5254786 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002153
ATGCCAATAGCTGATCTCCTGGGTGTTCAGTTCGACATGCAGCTGCTGGGCAAGCTGTCGGTCTCCGTGGCGGCTGTGCTGCTCATTTCATGGGCTTATAAATTCTACAGATCCAGGGGGCAGAGGGTTCACCGAAACGGATCAGACCAGAGTAATGGAAATGTACCTCAGCAGGGGCCAGGAGAGGTGACTGCGGGCTCCTGCATCAACTGCAACTCGGAGCTGCGTCCACGACGGAAAAGCCGGCCCGGGGATGCTGACAAGGggacttttgaaaataaacctgATACAGGGACTAAGGCATGTGACATAAGTCTGGCAAAGGATCCAAGTGTGCCTGCAGATGTGCATGTGGTGAATGGGGTTTGTCCTGTACGCCAGGGCACTGAAGCGCAGAGCCAGATGCCTGCCTCTGAACAGAACAGTGCCGACGCCACGCAGAGAGAAATTAGTTCCAGTCTTCTGGAGCCCCACGAACAGACTGATAGTTTTGTCCTCAGCAGTACATTGTCACCTCCTGCTGCAAAGGAACTGGGCCGGGCCAGTCCCACAGGCGGGCGATCCCCACGGCTGCTGAGGAAGCTGGAGCCCAGCGGGGCTGGTGTGGGGCGAGAGCTGAGACAGGACCTAGAGCATCCGGGCTCCTACTTCAGCTTCCAGTCCAAGGCCGAGATTAAAGTGGAAGACGGCGATCTCTTGCTGGAGAGACCTGGAGCTGAGCCACTGGAGGTGCGTGGGAAAATCTATGACTACTACGTGGAGTCTGCCTCCCAGTCCATCTCGGATGACAGTGCCTTCCAGTCGCATTTCTCCAGCCCCACACGCAGGCGCTACGAGGACTCTACTTTGCAGGACTCACTTCTGATGGAGCTGGAAGGAACATGGGAGAGGAGACGTGCTGGCAACAGCGGAGGCGAACGATCCGTAAAATCAAGTCCTTTAACGTCCCCCGTAATCACCCGGGATCTTGTTTTCACAGAGGATCCTGAGTTCCACAGTAAAGATGCACCTTTAAGTCTGATGTCCCTTCCTTCTGAGAAGCACAGACACGGCCTCATCCGCAAGGAGAGCATTTCGCAGATTGTGGAGAACTCGGACCTCCAAATCCCCTTTCTGGATCCCAGGGCTTCCACTCCAATGCACAGCAGGCTCAGCTCCAGAACTGCGTCATCAGAGGACCTCTGTCCCAGTCCTGTGAGTCCCTTGACAGACTCTGTGTTCCTTACTGGAACTAGCTTAGAAATGGTGGCTGGAGCCAATTTTCTACAAATGCCCATGGAGAACATAGACAGTTCTGAATTGGAGAGCCTAAAGTGCAAACTGGACTTGGGAAACTGTCTCCAAGCACTCAGCCTGGCCAGAAAGCATGGCATTGATGACCTCCAacaagcagttttgaaaatcatgTCTGATAACTATCTTCAAGTCTTGAGAGACCCAGGGTTGTACGGGAAGCTGAGAGCGGATGACAGAGATCAAATTCAAAAGCAGCGAATGAAAGGCAGACGATATCTCGTGGTAGCAGATATAGACCCACAAGACTGGACGAGGCCTAATGCAAATGGTGCCGAAGCAGGCCAAAGCAGGACCTCAAGCAGACTCTACTTTTACGATGACTATAAAGACATATGGCATCCCTTGAGCAGCCTTCCTAAAGAGGTCATATCTAAAGGATGCTCCATGTGTACCATGGACAACTATCTTTTCATCGCTGCTGGCTGCCAAGGATCTGACCTCAAGCCGTCTAGAAGCGTCTTCTGTTACAACCCTGTAACAGGTATCTGGAAGGAGATCTGCCCCCTGAATGAAGCTAGACCCCAGTGCAAACTAGTGGCCTTACAGGGCTACGTTTATGCTATCGGGGGAGAGTGCCTTTACACTGTGGAGCGCTATGACCCACGTGCCGATAGATGGTCCTTTGTAGCGCCTTTGCCCAACGACACTTTTGCCGTGGCCCACCGAGCCACAGCATGCAACGGACAGCTCTTTGTCTCTGGGGGAACTTTAAAATACACTCTGCTTCGCTACAACCCCAAGACAGACTCGTGGAAGGTAAGCTTGATCGTAGGGAGTAAAGAGCGAACCACAGAGATGGTGGCCATAAGAAACTTCATCTACCGCTTTGATGTCAACCCTGCTCTGGGTATCAGCGTGTACCGTTACCACGTCATAGCCCGGCTATGGTATGAATGCTCCACCAAGCGCTTACCCTACTGTGCAGCCTTCCAGTGTGCAAACATTGATAACCTGATCTACTGTATCAACCGTCAGTTCACAGTGAGGTTTGTGGCTGATGAGGTGTCTCCTTTCTTCGTGGCAGATGAATTGAAAGTTCTGACAATGGCCAAGgggattttgtttcctttagtTCTTGTCCTTCCGGAGAAAGAAACTCTGCAGACCAGAGTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002153 True 2412 mRNA 0.52 1 5252375 5254786

Neighbor

gene id symbol gene type direction distance location
AMCG00002154 dhrs3,LOC106582983 coding downstream 37967 5201418 ~ 5214408 (-)
AMCG00002144 lactbl1,LOC106582988,LOC106565891 coding downstream 441013 4797389 ~ 4811362 (-)
AMCG00002142 NA coding downstream 500043 4749168 ~ 4752332 (-)
AMCG00002141 NA coding downstream 504936 4741489 ~ 4747439 (-)
AMCG00002137 NA coding downstream 579023 4651295 ~ 4673352 (-)
AMCG00002155 igsf21,LOC108438574 coding upstream 9221 5264007 ~ 5286782 (-)
AMCG00002158 NA coding upstream 506048 5760834 ~ 5786032 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding upstream 550056 5804842 ~ 5827525 (-)
AMCG00002166 NA coding upstream 619996 5874782 ~ 5883711 (-)
AMCG00002164 LOC107385009 coding upstream 633704 5888490 ~ 5903073 (-)
G121188 NA non-coding downstream 24244 5227674 ~ 5228131 (-)
G121152 NA non-coding downstream 115369 5128038 ~ 5137006 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding downstream 136358 5110602 ~ 5116017 (-)
G121111 NA non-coding downstream 530194 4716592 ~ 4722181 (-)
G121039 NA non-coding downstream 683081 4567439 ~ 4569294 (-)
G121271 NA non-coding upstream 603215 5858001 ~ 5861642 (-)
G121274 NA non-coding upstream 616882 5871668 ~ 5874136 (-)
G121288 NA non-coding upstream 678872 5933658 ~ 5937833 (-)
G121384 NA non-coding upstream 955799 6210585 ~ 6213660 (-)
G121403 NA non-coding upstream 1022682 6277468 ~ 6277902 (-)
G120993 NA other downstream 1032498 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 1465831 3784236 ~ 3786544 (-)
G120907 NA other downstream 1536123 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1785914 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 2066022 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 720939 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 2571855 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 4353964 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 4502639 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 4575733 9830519 ~ 9833224 (-)

Expression


Co-expression Network