AMCG00002155 (igsf21,LOC108438574)


Basic Information

Item Value
gene id AMCG00002155
gene name igsf21,LOC108438574
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5264007 ~ 5286782 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002155
ATGAGGAGAAATCAGGTGAGGATGCAGATTCGGTTTGTGGGGCTCAGTGTCGTGAATGGAGATAAAAGAAAGAATAGAACGATTTCATGTTCAGGATCGCTATATTACAGTGCCGTCCTATTTGGCGTCCTGTTGAAACGTGCTCTTCTGTTTCCTCCTGCAGCGCCGCCCCTCTCGATCTCGGTGGTGGCAGCAGATACGCCGGCGCCCTTCAGCCGATACCAGGCCCAGAACTTCACCCTGGTCTGCATCGTGTCCGGAGGAAAACCTGCGCCTACGGTATACTTCAAGCGGGACGGTGAGCTGATTGAGGTGATCCCATATGTGCAGCCCACGGCAGGGGGCGAGGGCGCGGGGCTGAAGGGGCCACGGCCGCTGATCAGCCGAGAGCTGGATGACACCAAGCTGCAGAAGTCGCTCTCCCTGCTGGACTTGGATGGCAAGCCGGCCCGGCTGTTCACGGAGAACCCCCTGAAGGGCTACACCCCTGGGGCTCCCGGCTTCGAGCCCAGCCCCGCCACCGAGGTCATCCCGGAGACGGTGGTTAGCCGAGAGTTCCCGCGCTGGGTGCAGAGCACGGACCCCCTGTACTACTTCCGCCACGCCCACATCCCCCTCAACGACGGGACGGTGGAGGTGCGCGCCATGATCACCTGGACTCTCAACCCCCAGCTGGACAACGATGCCCTGTTCAGCTGCGAGGTCAAGCACCCTGCCCTCTCTATGCCCATGCAGGCCGAGGTCACCCTGGCGGCTCCCAAGGGCCCCAAACTTTTAATGACCCCGACCCGAGCAAAGGTAGGGGACACAGTCCGAATCACCGTCCAAGGATTCCAGGTAGGATCGGCCGGGAATGAGGTTTTCCCAGAGCCTCTTTTCACCTGGACTCGGGTCGGAGGTCGTCTGTTGGATGGGAGCTCAGAGCACGATGGGAAGGAGCTGGTTTTGGAGCGAGTGCCAGCCGAACTGAATGGGTCGATGTACCGCTGCACGGCCCAGAATCCCCTGGGCTCTACAGACACTCACACTCGACTCATCGTCTTTGACGCCGCCTCTTGTTTGGAAACGCTGGGACTGACCGTGGCTCTGCTCGCCCTAACAGTGACTCTTGAGCTGACGTGA

Function

symbol description
igsf21 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and synapse maturation. Predicted to be located in inhibitory synapse and presynaptic membrane. Predicted to be anchored component of external side of plasma membrane. Predicted to be active in adherens junction.

NR:

description
PREDICTED: immunoglobulin superfamily member 21-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002155 True 1122 mRNA 0.60 6 5264007 5286782

Neighbor

gene id symbol gene type direction distance location
AMCG00002153 NA coding downstream 9221 5252375 ~ 5254786 (-)
AMCG00002154 dhrs3,LOC106582983 coding downstream 49599 5201418 ~ 5214408 (-)
AMCG00002144 lactbl1,LOC106582988,LOC106565891 coding downstream 452645 4797389 ~ 4811362 (-)
AMCG00002142 NA coding downstream 511675 4749168 ~ 4752332 (-)
AMCG00002141 NA coding downstream 516568 4741489 ~ 4747439 (-)
AMCG00002158 NA coding upstream 474052 5760834 ~ 5786032 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding upstream 518060 5804842 ~ 5827525 (-)
AMCG00002166 NA coding upstream 588000 5874782 ~ 5883711 (-)
AMCG00002164 LOC107385009 coding upstream 601708 5888490 ~ 5903073 (-)
AMCG00002173 megf6 coding upstream 747062 6033844 ~ 6085952 (-)
G121188 NA non-coding downstream 35876 5227674 ~ 5228131 (-)
G121152 NA non-coding downstream 127001 5128038 ~ 5137006 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding downstream 147990 5110602 ~ 5116017 (-)
G121111 NA non-coding downstream 541826 4716592 ~ 4722181 (-)
G121039 NA non-coding downstream 694713 4567439 ~ 4569294 (-)
G121271 NA non-coding upstream 571219 5858001 ~ 5861642 (-)
G121274 NA non-coding upstream 584886 5871668 ~ 5874136 (-)
G121288 NA non-coding upstream 646876 5933658 ~ 5937833 (-)
G121384 NA non-coding upstream 923803 6210585 ~ 6213660 (-)
G121403 NA non-coding upstream 990686 6277468 ~ 6277902 (-)
G120993 NA other downstream 1044130 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 1477463 3784236 ~ 3786544 (-)
G120907 NA other downstream 1547755 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1797546 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 2077654 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 688943 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 2539859 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 4321968 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 4470643 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 4543737 9830519 ~ 9833224 (-)

Expression


Co-expression Network