AMCG00002172 (mrto4,LOC106582960)


Basic Information

Item Value
gene id AMCG00002172
gene name mrto4,LOC106582960
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6106190 ~ 6108484 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002172
ATGGCATTTCTCTTCACAGTCTCCTTAACCAAAACCACAAAGAAGGGATTGGAATCCAAGCAGAATTTAATCGAAGagCTGCGGAAATGTGTGGACACCTACAGATACCTGTTCATCTTCTCCGTGGCCAACATGAGGAACAACAAACTGAAAGACGTCAGGACAGCGTGGAAGCACAGCAGATTCTTCTTTGGCAAAAACAAAGTGATGATGATTGCATTGGGAAAGGGGCCTGCAGATGAATACAAGGACAATTTACACAAGGTCAGCAAGTATTTGAAAGGTGAAGTGGGTCTGCTGTTCACCAATAAAACCAAAGAGGAGGTGAAGGAGTATTTCAGCCATTTCAAGGAGGTGGATTTTGCACGGGGAGGGAGCAAGGCGACTATGGCTGTGACCCTGGACGAAGGTCCCCTGGATCAGTTCCCCCACTCCATGGAGCCCCAGTTGAGACAGCTGGGTTTGCCGACAGCTCTGAAGAAAGGCGTGGTGACTCTGCTGAAAGACCATGATGTGTGCAAAGATGGGGAAGTTCTGACGCCCGAACAAGCTCGGATTCTGAAACTCTTCGGCATCGAGATGGCGGAGTTCAGCGTTCAGATCAAGTGCATGTGGAACTCCGAGACGGGAGAGTTCGACAAGCTGGAGGACGCGGAGGAGGCCGAGGAAGAGGACGAAGAGGAGGGGAGTGATGACTga

Function

symbol description
mrto4 Predicted to be involved in nuclear-transcribed mRNA catabolic process; rRNA processing; and ribosomal large subunit biogenesis. Predicted to act upstream of or within ribosomal large subunit assembly. Predicted to be located in cytoplasm and nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human MRTO4 (MRT4 homolog, ribosome maturation factor).

NR:

description
PREDICTED: mRNA turnover protein 4 homolog

GO: NA

KEGG:

id description
K14815 MRT4; mRNA turnover protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002172 True 699 mRNA 0.50 7 6106190 6108484

Neighbor

gene id symbol gene type direction distance location
AMCG00002173 megf6 coding downstream 20238 6033844 ~ 6085952 (-)
AMCG00002164 LOC107385009 coding downstream 203117 5888490 ~ 5903073 (-)
AMCG00002166 NA coding downstream 222479 5874782 ~ 5883711 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding downstream 278665 5804842 ~ 5827525 (-)
AMCG00002158 NA coding downstream 320158 5760834 ~ 5786032 (-)
AMCG00002177 NA coding upstream 138782 6247266 ~ 6247869 (-)
AMCG00002178 NA coding upstream 149563 6258047 ~ 6262305 (-)
AMCG00002185 rnf207b,LOC108434591,LOC107593377,LOC107712689,LOC106572244 coding upstream 249173 6357657 ~ 6381431 (-)
AMCG00002187 NA coding upstream 319881 6428365 ~ 6447619 (-)
AMCG00002191 espn coding upstream 342790 6451274 ~ 6500272 (-)
G121288 NA non-coding downstream 168357 5933658 ~ 5937833 (-)
G121274 NA non-coding downstream 232054 5871668 ~ 5874136 (-)
G121271 NA non-coding downstream 244548 5858001 ~ 5861642 (-)
G121188 NA non-coding downstream 878059 5227674 ~ 5228131 (-)
G121152 NA non-coding downstream 969184 5128038 ~ 5137006 (-)
G121384 NA non-coding upstream 102101 6210585 ~ 6213660 (-)
G121403 NA non-coding upstream 168984 6277468 ~ 6277902 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding upstream 273949 6382433 ~ 6385919 (-)
G121444 NA non-coding upstream 299221 6407705 ~ 6407915 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding upstream 304529 6413013 ~ 6413274 (-)
AMCG00002167 NA other downstream 90797 5975725 ~ 6015393 (-)
G120993 NA other downstream 1886313 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2319646 3784236 ~ 3786544 (-)
G120907 NA other downstream 2389938 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 2639729 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 1718157 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 3500266 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 3648941 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3722035 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 3728434 9836918 ~ 9853075 (-)

Expression


Co-expression Network