AMCG00002174


Basic Information

Item Value
gene id AMCG00002174
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6229136 ~ 6242079 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002174
ATGGGACTCTGCCACCCTTGCCTCATTGCATGGCTTCTGTTTTGGGCATGCTGGGATCAGGGGGGTGCAGAGAGGCCCAATCTTCTTTCTCAGTTCTGGCTGGAGGGGGATTATGTGATAGCGGGTCTGTTTCCTCTGCACAACGCGGACAGGTCCACAAAACCTGTGCCGGAAATGGACGACTGCCGAAGGGGCACATTCAATAAGCATGGCTACCAGCTGATGCAGGCGATGAGATTCACCATCGAAGAAATCAACAATGGCAGCAGTAGGGACGGCCTGCTTCCAGGAGTTTCCCTTGGCTACCAAATCTATGACACTTGCACCGAGCCTGCTAGCATACTGGCCACCATTGACCTCCTGGTCCAACAGTCCAATTACTACAATGGCATTATTCCCAAATACACCGACTCCACCCGAGAGCAGATGATCACGATGATCAAAAAAATCATGCAGACCCATGTCAACACCATAGTGGTCTTCTCCAGCAAACGAATTGCCACCGGCTTCTTCCAACTGGTGGTGGAGCAGAACGTCACGGGGAAAGTGTGGATTGGTTCGGAAGACTGGTCAGTGTCCACCATGGTGTCTGGACTGCCTGGCATCCAAACCATCGGGAGTGTCCTCGGCATCGGGGTCAAAACCGCCAAGATGCTCGGCTTCCAAGAGTTTGGAGTTCTCGCTATGGAAGCGGCAGCATATGCGACTGGCAACTCATCTAATGACACGGGTGAAGTGGCCGGCCACGGGTTAAGGTGCCTGCAAGGCTGTGATCACATCCAGACATTGACCACCAGAGACATACCGTTAGAACTGTATGATATCCAGTCCTCCTACAACGTTTACAAAGCTGTGTATGCTCTGGCACATGCACTGCGCTCTTCCCTGGGCTGCAACTCGGGGAAATGCGCCAAAGAGGATGTCCAACCATTTAATCTTTTGGAAAACTTGAAACAAGTCAACTTCTCAGTGGGTGGCACATCCATGTATTTCGATCAGAATGGAGACCCCCCCACGGGTTATGATATCATGGCCTGGGACTGGGCAGGGGGGCAGTTGTCCCTCAGGGTGGTCGGCACATTCAGCCCTGACCCAGCAGATCTGAAAATCAACGCCTCCCTCATCAACTGGAACTCGGACAGCAAGGGCACAGTCCCGCAGTCCTTGTGTTCCCCAGACTGTCCCAAAGGTAGCAGGAGACTTCAGACTGGGTCTCATGTTTGCTGCTTTGACTGCCAGATCTGCCCAGTTGACACTTTCCTCAATAAGACTGGTTTGACCTTTTGCCAGCCGTGTCTGATTCATGAGTGGTCGCTGTCAGGGAGTGAAAGGTGTACCAACAGGACCGTGGTGTACCTCCCCTGGGCAGACTGGGTGTCGGTGGTCCTGCTCCTGGCCTCTGCTCTCACCCTCTTCCTGACGCTGGTCACCGCGGCCCTGTTCCTGGTGAACCTGAGCACGCCAGTGGTGAAGTCCGCAGGCGGGCGGACGTGCCTGGTGATGCTGGCCTCTCTGGCGGTGGCCACCTGCAGCACCTTGTGCCACTTTGGCGTTCCCACCCTGCTGGCCTGCATCCTCAAGCAGTCCCTCTTCACCCTCAGCTTCACTGTCTGCCTCTCCTGCATGGCCGTGCGCTCCCTCCAGATCGTGTGCATCTTCAAGATGTCCGCCAAGCTTCCCAGGGCCTACGAGGTGTGGGCCAGGAACAACGGGCCCTCGATCGTGATCATCGTCTCGGCTGCCACCGAGCTCTTCATCTCGCTGATGCACGTTCTCGAGGAGCAGCCATCCCCCACTGAGGTGTATAATATCTACCCTCACGCCATCCTCCTGGAGTGCACTGTGCTGGCAAGTGTGCTGGGGATTCTGGGAGGTTATTTCCTGCCCAAGGTGTATATCATTGTGCTAAAACCCCAGCTCAACACGGCGGCTCATTTCCAGAACTGCATTCAGATGTACACCACGAAGAAGACGTGTTTGCCCCTAAAGTTCAATAAGCCTGGAGACTATCTCATTGGAGGACTTTTGACCTTGTGTCAATCTCCTTCACACGTCACCTTGAATATGACACACTGCAAATGTGAAAAAATGTATGCGGCCGGATGCCAGATTCTTCAGCTGCTGGACCTCACGTTGGCCGAAATCAACAACTCCACTCAGCTCCTTCCCAACATCTCTCTGGGCTACCAGGTCTTGGACTGCTCCCTCGACACAGACTGCCTGGACTCCACTCTGTTGTTCCTGagcaacaagaaaacaatgtacGTGGACTCGCAGCCACTGATGTACAAGAAGCAGACCGACATCAAGGCGATCTTCGGACCCTCTTACAGTGCCACGGCTCTGGGAATAGGCGGAATTGTTGGTGCTTTTCAAGTACCTTTGaTTTCCGCCTCAGCCACCAACCAGAAACTGAGTAACAAGGAGCTGTACCCTTCGTTCATGCGCACCACTCCCAATGACAAGAATTTAGTGTTGGCAATACTGCAGTTCTTGAAAGGGATTGGCTGGAAATGGGTGTCTCTGTTGGTCAGTGCCGATGACTACGGCAGTGATGTGGGTAAGAGCTTTACTGAGCTGGCCCCTGAGTACGGGGTTTGTGTCGCGTACAAGGGGGTCTTAGCGATTGGGTCTAATGAGGAGATAGAGGCAAGCGCCCAGGAGTCAGTCAAGAAAATGATTTTCTTCAAAACGAAGATCGCTGTGATCCTCTCTGTCTCTAAGAGTATTGTGGGTTTCTACACAGTTGCTCTCCGAGAGCCAGCCTTGAGAGACAAAGTGTGGCTCAGCAGTGATACACTGTCGAAGATACCCATGATATTAGAAATACCTGGATACAAGAGACTGGGCACCCTTATAGTTTTTGGAAATATTCAAGTGCAGGTCCCTGAAGATTTCATGGCCAGACTTCAAAAACACACGGAGCCGCCGGTATTGCCACTCACTAAAGATGGGCTTCCCACACTACCACAATGTGATGATTGTAGAGTGAACTTCTCTGCACAACAGATATCACAGGAAGTGTTAAGGTTGCAGTCTGCTGTGTACACTATTGCCCATGGCATACATAAATTGCTCAGCTGCGACTccaaaaactgcattaaaagAGATTTTTTGCCCAAAGAGACGGGTAAATCATCGTGCTCTGATGACTGCCAGCCCGGGcacagaaaacaacagacaGGACTCCACCGATGCTGCTGGGAGTGTAAAGTCTGCCCAGAAGGAACTTTCTTCAACACAAGTGATGAGTACAACTGCCATCTCTGCCCCAAGGCACACTGGTCTCCACAGGGGAGTGAGCGCTGCTTCCCGCGTACACTGCGGTACCTGTCCTGGGACAGTGGGATCGGCGTGGGGCTACTGGTGTCCACTTCAGCAGTGCTCCTGGTGGTGGTGGCCACAGGGGCCGTGTTCGCCCTAAAACGCCATACGCCGGTGGTGCGGTCTTCCGGGGGCAAGATGGCCTTCATCATGTTGGCCTCCCTTCTGTCCTCTTGCATCTGCCTGTACGGTAACTTCGGCATGCCCTCCACGCTGTCATGTCACTTCCGCACTCTCTCCGAATTGTGTTTCACTGTCTGCTTGGCCTGCATCGCCGTGCGCTCCTGCCAGCTCCTGTGTATCTTCAAACTGGCTGCCAAGCTCCCGAAAGCTTGCGATTTCTGGATCAAAGACCGGGGCCAGTATGTCCTCATCTTTCTGTGTACGGTCCCCCAGGTGGTGATTTCCATTTACCTCATTACTGGGGATGTCCCGGTCCCGGAGTACTTTGAGAAAGACATGGTTTTACTAACGCCAGAGCTGAACACAACGGCCCATTTTCAGAGCTGCATTCAGTTGTACACCATGCAGAAATCCACACATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002174 True 3870 mRNA 0.53 13 6229136 6242079

Neighbor

gene id symbol gene type direction distance location
AMCG00002176 aldh4a1,LOC106582961 coding upstream 2306 6216381 ~ 6226830 (+)
AMCG00002175 NA coding upstream 21254 6200862 ~ 6207882 (+)
AMCG00002171 LOC106565910,LOC106582958 coding upstream 55230 6171079 ~ 6173906 (+)
AMCG00002168 ubr4 coding upstream 60446 6120553 ~ 6168690 (+)
AMCG00002169 emc1,k0090,LOC106572884 coding upstream 109085 6109219 ~ 6120051 (+)
AMCG00002184 pank4,LOC107669004,LOC107745330,LOC107742899,LOC107560420 coding downstream 42466 6284545 ~ 6285561 (+)
AMCG00002183 pank4,LOC106565907 coding downstream 45138 6287217 ~ 6296247 (+)
AMCG00002180 NA coding downstream 74207 6316286 ~ 6324559 (+)
AMCG00002181 NA coding downstream 84805 6326884 ~ 6345200 (+)
AMCG00002179 icmt,LOC107737573 coding downstream 114326 6356405 ~ 6360644 (+)
G121228 NA non-coding upstream 658889 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 953213 5243709 ~ 5275923 (+)
G121187 NA non-coding upstream 1001037 5227674 ~ 5228099 (+)
G121178 dhrs3 non-coding upstream 1024522 5202849 ~ 5204614 (+)
G121176 NA non-coding upstream 1026674 5201402 ~ 5202462 (+)
G121402 NA non-coding downstream 35439 6277518 ~ 6277900 (+)
G121417 NA non-coding downstream 85118 6327197 ~ 6327481 (+)
G121526 NA non-coding downstream 550897 6792976 ~ 6798043 (+)
G121680 NA non-coding downstream 1318987 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 1404639 7646718 ~ 7648316 (+)
AMCG00002152 NA other upstream 1002480 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 2686959 3533814 ~ 3542177 (+)
G120742 NA other upstream 3269661 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 3375009 2852154 ~ 2854127 (+)
G120518 NA other upstream 4288320 1924022 ~ 1940816 (+)
AMCG00002190 acot7 other downstream 344575 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 1151721 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 2496692 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 3602126 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 4325833 10567912 ~ 10604839 (+)

Expression


Co-expression Network