AMCG00002176 (aldh4a1,LOC106582961)



Basic Information


Item Value
gene id AMCG00002176
gene name aldh4a1,LOC106582961
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6216381 ~ 6226830 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00002176
CCCTGACCCGCGGCAGTGGCGTGGGCCGCTCTGCCTGTACTGTCATTTCTGATCGTTTCCCACCAGGAGCAATAAAAGTGCACTTCCTTATCTGTGCAGATTCGCGGCACAAGCATCCCTGCGACGTTTACACTCGTctgcttgtttttattgtatttgttattgagCCTTTTCCCTGCGACATGCTGCGTGCGAGGGCGGCGGTCTGGCGGTCTTGGAGAGGGTTCAGGACGTTCCCCTTTGCTGCGGTGGAAGTGAAGAATGAGCCCATTCTAGAGTTCAAAGACGGGAGCCCAGAGAGACAGGCTCTGATACAGGCCCTAAATGAGCTGAAGGGGAAAACGGAGGAAATCCCCTGTGTGGTGGGAGACGAACAAATCTGGACCAAAGACATAAGATACCAACTCTCGCCCTTCCAACATGCGCACAAAGTGGCCAAGTTCTGTTATGCTGATAAGGAACTGCTGAATAAAGCCATCCAGGCCTCCGTCGCAGCTCGCAGGGAATGGGACCTGACGCCCGTGCAGGACCGAGCCCAGATCTTCTTCAAGGCCGCAGACATGATCAGTGGACCCCGGAGAGCGGAGATCTTGGCCAAGACAATGATCGGCCAGGGCAAGACCGTGGTGCAGGCCGAGATCGACGCCGCCCCAGAACTGATCGACTTCTTCCGGTTCAACGCCAAGCATGCTGTTGACCTGGAGAAGCAGCAGCCGCTGCCGGGAGAGGGCAGCACCAACACCATGCTGTACCGAGGGTTGGAGGGGTTCGTAGCTGCCATCTCGCCGTTTAACTTCACTGCGATTGGCGGAAACCTGGCAGGAACTCCAGCACTGATGGGGAATGTAGTCCTGTGGAAGCCCAGCGACACCGCCATGTCGGCCAGCTATGTTGTCTACAAGGTCTTGCGGGAGGCGGGACTTCCTCCCAACATCATCCAGTTTGTGCCGGCCGACGGTCCCATCTTCGGAGACGCCATCACAGCATCTGAGCACCTGGCTGGCATCAATTTCACCGGCAGCGTACCAACCTTCAAACGGCTGTGGAAGCAGGTGGCGCACAACCTGGATCGCTATCGCAACTTCCCGCGCGTGGCAGGAGagtgCGGCGGGAAGAACTTCCACTTCGTGCACAAGTCTGCGGACGTCCAGAGCGTGGTGATGGGGACGATCCGCTCAGCCTTCGAGTACGGGGGGCAGAAGTGCTCGGCCTGCTCCCGGATGTACGTCCCCGACTCCCTGTGGCCGCAGATCAAACAGGGGCTCCTCGCCGTGCATCAGCAGATCAAGCTGGGCAACCCTGTGGAGGACTTCAGTACGTTCTTCTCCGCTGTCATCGACGACAAGACTTCTAAAAACCTGACCGTTCTGGCGGGGGGGAATTGTGACAACAAGCAGGGGTACTTTGTGGAGCCCACTATCATTGAGACCAAGGACCCACAGGATATCATCATGAAAGAGGAGATCTTCGGCCCGGTGCTGACCGTGTATGTCTATCCCGAGAACGACTACAAGGAGGTACTGCAGCTCATTGACAACACGTCCCCCTACAGCCTAACGGGAGCTGTGTTTGCCCAAGACAAGAACGTCATCGACGAGGCCGCGAGGGCTCTGAGGAACGCAGCGGGCAACTACTACGTCAACGACAAGTCCACGGGCTCCATCGTGGGCCAGCAGCCGTTCGGGGGAGCGAGAGCTTCAGGGACCAACGACAAGCCGGGAGGCCAACACTACGTCCTGCGGTGGACCTCTCCCCAGGTGGTGAAGGAGACAAACGTTCCGCTGACAGACTGGAAGTACCCCTACATGGGTTGAGGTTGACCCCCACTTCACTCTTCCGAAGCTCTGCCAGAACCCACTTGACCCCTACCCCCGAGAAGCTGACTGGACTCTAGTAATTTACTACTGATCTTGTGAAACACAGAGAATacagaatgttctttttttttggatgaAGGAGTGTTGCTAACATTTCAAAGCGTTGCCTCAGCCCTGGCACGGGACATGGCTTAGAAATCGCTGAGCTAGGCTTGTTGCGCCAGAGCGGTGAAGGTTAAGACTCACCCCCTTCTGTGTGCCCTCCTGTGGGTTGGCAAAGGTGCAGACAGTGCAGCATAGGCAAGAGTTATGACATACAGTGTAATTGCACTctatattttaatagattttaacTAAACTAAAGAATCTGCTATTTTTGTTTACGTTGATGTGTGTAGTTccgggtgagagagagaaacagactgacATGGCTAATGTATCGTGACTACATCTGTCTCTGTCGGAGTTATCAGTGTTATACAGTGAGAACATCCGGCAGAAATCCTGTGCTACTGACCTGAGCTGCTGTATGAATGTATGGAAGATAAATGTCTCAATGGTGGTGCACTGAACA

Function


symbol description
aldh4a1 Predicted to enable 1-pyrroline-5-carboxylate dehydrogenase activity. Predicted to act upstream of or within proline catabolic process to glutamate. Predicted to be located in mitochondrial matrix. Is expressed in several structures, including alar plate midbrain region; optic tectum; optic vesicle; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in hyperprolinemia type 2. Orthologous to human ALDH4A1 (aldehyde dehydrogenase 4 family member A1).

NR:

description
PREDICTED: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

GO:

id name namespace
GO:0010133 proline catabolic process to glutamate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006561 proline biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function
GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity molecular_function

KEGG:

id description
K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00002176 True 2391 mRNA 0.55 15 6216381 6226830

Neighbor


gene id symbol gene type direction distance location
AMCG00002175 NA coding upstream 8499 6200862 ~ 6207882 (+)
AMCG00002171 LOC106565910,LOC106582958 coding upstream 42475 6171079 ~ 6173906 (+)
AMCG00002168 ubr4 coding upstream 47691 6120553 ~ 6168690 (+)
AMCG00002169 emc1,k0090,LOC106572884 coding upstream 96330 6109219 ~ 6120051 (+)
AMCG00002170 NA coding upstream 111827 6100903 ~ 6104554 (+)
AMCG00002174 NA coding downstream 2306 6229136 ~ 6242079 (+)
AMCG00002184 pank4,LOC107669004,LOC107745330,LOC107742899,LOC107560420 coding downstream 57715 6284545 ~ 6285561 (+)
AMCG00002183 pank4,LOC106565907 coding downstream 60387 6287217 ~ 6296247 (+)
AMCG00002180 NA coding downstream 89456 6316286 ~ 6324559 (+)
AMCG00002181 NA coding downstream 100054 6326884 ~ 6345200 (+)
G121228 NA non-coding upstream 646134 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 940458 5243709 ~ 5275923 (+)
G121187 NA non-coding upstream 988282 5227674 ~ 5228099 (+)
G121178 dhrs3 non-coding upstream 1011767 5202849 ~ 5204614 (+)
G121176 NA non-coding upstream 1013919 5201402 ~ 5202462 (+)
G121402 NA non-coding downstream 50688 6277518 ~ 6277900 (+)
G121417 NA non-coding downstream 100367 6327197 ~ 6327481 (+)
G121526 NA non-coding downstream 566146 6792976 ~ 6798043 (+)
G121680 NA non-coding downstream 1334236 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 1419888 7646718 ~ 7648316 (+)
AMCG00002152 NA other upstream 989725 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 2674204 3533814 ~ 3542177 (+)
G120742 NA other upstream 3256906 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 3362254 2852154 ~ 2854127 (+)
G120518 NA other upstream 4275565 1924022 ~ 1940816 (+)
AMCG00002190 acot7 other downstream 359824 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 1166970 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 2511941 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 3617375 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 4341082 10567912 ~ 10604839 (+)

Expression



Co-expression Network