AMCG00002179 (icmt,LOC107737573)


Basic Information

Item Value
gene id AMCG00002179
gene name icmt,LOC107737573
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6356405 ~ 6360644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002179
CGCCGCTCTCAACATGGCCGGGGAGAAGTTCGTGTTGGAGGGGCGAGTGAGTCTCACAAGCTTCGGGCTGGGGCTCGGCGCGGTGCTGCTGCCCGTGCTGGCGGCGGCCGGCTCGCACATCGACTGGGTGCAGCACTACCTCACCGGCACTCACGGCAAGATCGCCATAACCGTGTGTATAGCGGCGGTGAACGgcgcgctgctgctgctgcaccggGGGCCGCTGTATAAGgTTGCAGTGAGAGCCTGCTTCCTCGGCTTTGCCTTTGGCTGTGGCTTGCTGGTGAGCTTTGGCCAGACGACGTGGAGACACTTCGGCTGGTACATGTGCTCGCTGTCCTTCTTCCACTTCTCCGAGTACCTGGTGACGGCCATCATTAACCCGCGCAGCCTGTCCCTGGACTCCTTCCTGCTGAACCACAGCCTGGAGTACACTGTGGCGGCCGTCTCCTCCTGGGTGGAGTTCACGCTGGAGAAGATGCTGCTCCCAGAGCTCAAGCAGCTACGCTGGCTCAGTCTGGCCGGGCTGCTCATGGTCCTGTTTGGGGAGTGCCTGCGCAAGTCCGCCATGCTGACCGCCGGCTccaacttcaaccacatcgtcCAGAACGAGAAGGCAAGGACCCACGTCCTGGTCACCAGCGGCGTCTACTCCTGCTTCCGACACCCCTCCTACGTGGGCTGGTTCTACTGGAGCATCGGCACGCAGGTGATGCTGTGCAACCCGGTGTGCGTGCTGGGCTACACCCTGGCCTCCTGGCGGTTCTTCCGGGAGCGGATCGAGGAGGAGGAGATCTCGCTCATCCACTTCTTCGGTGAGGAGTACCTGGAATACAAGCGCAAGGTCCCCACCGGCCTGCCCTTCATCCCCGGAATCCGAGTGGAGTCGTAAGCGGAGAGATGGGAAAACGCGCACATATCCTCTACAGACTGGCGCCGCAAGAGGAACGGTGGTCGTCTGGCCAAACCACGGCTCGGCCCCTTTGCCACTCCGAGGGccgagggtgggggggggcagcggCACACTTAGACACCGGGCGCATCCTAGAGCTCCCCACGCCAGGGCCCCACACCACACCAAAGCAGGGGTGGGAGAGCTCCGCCGCGGCCGCGCCACGCCTCTCTCGCCGCCACACACCGAATCCATCGCACCGGccgctttttatttgttttcataaccCAGATCCTATCGCTCCCTAAGGACGCGGGATTCAGTAACCGGAGACCCTGTTGATTTCCCCCCCCCGTCTGTCCGTTTGCGTGTCTCTCCTCTTCGCCGTCTTGGTGTCGTCCGATTTTCTCCCGTCGTCCATCTGCGTCGGACGTCCATCTCGACTTGCGTAGTCGTTGGAATTGGAAACGACGAACTCTCGATTGTGATCGGGAAAAACAAACGCTAAGCTACGTTTCATTTGCAGTCTTGTAGCGTTTCTTACCCTGGAGTTCTTGAGCTCTGaactgtgagtgtgtatgtatgtgtgtaagtgtgtgtgtgagtgagtgtgagagactGTGTTGGGGGAGGGAGGTTGCCGTTCAGTTCGCTGCTGTGCGTTTGCTCTGTTGTCTCCCCGTGGTTAATCTCGCACTCGGCCGTTTTCTCTCTTCACGCCGCTCTGTTGCATCGAACTATGATTTGCTTTGAATtacacattgtaaaaaaaatgacaatcaaAAGAGGGGGGGGAACAAAAATGTTATCCACACTTTAATTTGcaaaagttttctttttaaagaggTTTCTGTTCAAAAGCTGCTGTAATTTCCGAACGGTAGATGTAGCAATTGGTGACTTTCACAAACCACAAGACCCATCACTGTTTTCCTGTTGGGATACGCCGCTCACAGGGACTGTTAGCCGCTCTCCAGTTTGGCTTGTATGTAGTTTTCGGTTCGTTTTAATGCCTGCACCGGTAGCCCTCTTTTCATTGGCTGGTAGAGAGATTCTTCACGTCCAATCACAGTCTGTCATGCAGTGGACCAAAGGCACCTGATCTTTTTGCACATTCACATATCTGGGACACATTcttgctttataaataataactaagtAATTGTCTTCTTTACAAATTAGTTTTAGTCCACAGTAAATGTTTTGCACCATAGTAAAACAGGGGTGGGGCAGTAAGTAAGTGCAGGTGATGTCCAAGTCATGGGATGATtgttcccccctctcccctcccttccctctctctcctccacctcTTTGCGAATGCGAGATTGAAGCCGATATAAATTGGCCAGACTCCTGAAGCACGGCTGCTTTCGGACGTTTGCAGACTCGGGTTGATTTGTACTGATGCGGCAATACCCCTTGCATGTGGGGGGGGTTTACTGTTGCTTCAGAAAAGAAACTCCgatctccctctcttctctccccaCCTCCCGTCTTCATTCACCGGCTCCTGGTTTTCAAGCACTGACGCCGTTTCTCATCCTACAGAAATGCAATCCATCGTCTCTTCTTAGCCCAGGTgtgatttgtaaatatttacttaattggaAGAGTTAtattgtggttttttttttggtttttttatatattgtattttaatatttggagATTCTTGAGTGAGGAGGTGGGGATGGATGGCAAATAAACTTGCTTGGATTATTAAACTCTCA

Function

symbol description
icmt Predicted to enable protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity. Predicted to be involved in C-terminal protein methylation. Predicted to act upstream of or within methylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in liver and yolk syncytial layer. Orthologous to human ICMT (isoprenylcysteine carboxyl methyltransferase).

NR:

description
PREDICTED: protein-S-isoprenylcysteine O-methyltransferase isoform X2

GO: NA

KEGG:

id description
K00587 ICMT, STE14; protein-S-isoprenylcysteine O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002179 True 2625 mRNA 0.54 5 6356405 6360644

Neighbor

gene id symbol gene type direction distance location
AMCG00002181 NA coding upstream 11205 6326884 ~ 6345200 (+)
AMCG00002180 NA coding upstream 31846 6316286 ~ 6324559 (+)
AMCG00002183 pank4,LOC106565907 coding upstream 60158 6287217 ~ 6296247 (+)
AMCG00002184 pank4,LOC107669004,LOC107745330,LOC107742899,LOC107560420 coding upstream 70844 6284545 ~ 6285561 (+)
AMCG00002174 NA coding upstream 114326 6229136 ~ 6242079 (+)
AMCG00002182 rpl22,LOC107737211,LOC107593380,LOC102779685,LOC103047485,LOC108414460 coding downstream 22411 6383055 ~ 6385782 (+)
AMCG00002186 chd5,LOC102784485 coding downstream 42266 6402910 ~ 6424263 (+)
AMCG00002188 NA coding downstream 159865 6520509 ~ 6522224 (+)
AMCG00002189 acot7,LOC107754737,LOC107693425 coding downstream 176437 6537081 ~ 6553474 (+)
AMCG00002192 gpr153 coding downstream 275290 6635934 ~ 6655887 (+)
G121417 NA non-coding upstream 28924 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 78505 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 786158 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 1080482 5243709 ~ 5275923 (+)
G121187 NA non-coding upstream 1128306 5227674 ~ 5228099 (+)
G121526 NA non-coding downstream 432332 6792976 ~ 6798043 (+)
G121680 NA non-coding downstream 1200422 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 1286074 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 1469163 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 1549914 7910558 ~ 7917243 (+)
AMCG00002152 NA other upstream 1129749 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 2814228 3533814 ~ 3542177 (+)
G120742 NA other upstream 3396930 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 3502278 2852154 ~ 2854127 (+)
G120518 NA other upstream 4415589 1924022 ~ 1940816 (+)
AMCG00002190 acot7 other downstream 226010 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 1033156 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 2378127 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 3483561 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 4207268 10567912 ~ 10604839 (+)

Expression


Co-expression Network