AMCG00002180


Basic Information

Item Value
gene id AMCG00002180
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6316286 ~ 6324559 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002180
CAGCAGGTGCACGGTGCTAACAGGATGGCGGTTCTCTCCTGGTGTCGGTGTGCCACTCTGCTCCTTGCCACGTTGGTACTCTCGGACAGCGCCGAGCCCGGATCTAGAAACGTGAAAAAAGCCCTGGCCCAGCCCGCTCCCGGGGGCACCAATACCCTCCAGTCCCTGGAGTTGTGGCCCCAGCGGAGCGGACAACATCGCCGGCATGGGGGGCGCAAAGACAAGGCCAGCGCCGGGCTGCTCTCCCGGGGAGCGCCGCAGCTGCAGGGCCGGCCCGAGGACGACGGGATGGGCTTGGAGGGGCTCAGCCCGGTGAGGCTGGAGATGGGCCCCGGGGAGCGGAGAGTGGGCGCCGGGGAGCGCAGAGGGAGCACGGGGGATGCCAGCTTTCTGGGTTTCGGGATCCCCTTCCACGAGCGAGACAACCACCCCCCCGGCAGCGAGGGAAGCCTGAAGGGCAGGAGACACGGCCACCACCTGGAGCACAAGAAACACGGAGGGAGGAAGGACAAAGCCAGGCACGCCAAAGTTCGACTCCCCGAGCCAGAGCTGGGCTCCGTCCTGAAGGAGGGCGAGGTGTTCGAGGAGCAGCCCCCCAGCAAGCCTCCCTCGGAGAGCGCCGCGCCCCCCACCGCCGAGCCCACCCCGACCCCCGGCGTCAGCCCCAGCACCTTCCTGGTCACCACAGTGGCGAGGATCGAGGAGCTCCCGGTACTGCCCCCCGCCTCCACGAAACCACAGagaaTAGGCCACAGCCGGGCGAGGGCACAGGGTGAGGTGATGCCCACCTTGGACATGGCGCTCTTCGACTGGACAGACTATGAGGACATGAAGCCAGTGGACACCTGGCCATCTTTAAAGAAGAAAGAGAAACGGCGCAGCAAGAACCTGAGCAACGTCAATATGACCGTGGAGTCGGAAGCCATGGCCGAGCCCTGCGATCACCACCTGGACTGCCTCCCCGGTGAGTCTGACTCGGGCCTGCTGCCTCAGGCCAGTCCCCTGCTCCTGCACCGGCCAAGCTCCTGCTGTGACCTGCGCCAACACGTGTGCAAACCACACAACCGCGGGCTCAACAACAAGTGCTACGACGACTGCATGTGTGAGGAAGGCCTCCGTTGCTACGCCAAATTTCACCGCAACAGGAGGGTGACCCGGAGACGGGGCCGCTGCGTGGACCCCGAGTCGGCCAACAGCGATCAAGGGTCATTCATCACCGTCTGAGAGAGCGGGGCAGATCCACACAGACCCCACGCACCCACACAACCGAGTGGAGAGAGGGCGAGGAGAAAAAACGCaaacgacgacgacgacgacaaCACAAATCAACCCGGGTTAACCgaaccttttttatatatttactttcaaTCCAGTCgaggattttgtttattttctgattcaGTGCACCcagatttcagaaataaatcgGTTGCTGATCACGACAGCTCCCATAGGTGTAACCTGGCTGTAAGTATGACAAAGTTGGAGGCTGCAAAACGAAATCACTTTTCTTAAATGTGTATgctaattttgttaatttatttaagatgTATGAGGCGTGTCTTAAACTGTATCTTTGTAAAACAGCTGTTTCTGCGTTTGTAGCGGTAAGAAAGGGAGCACAACAAGAATGCGTTTTATTTTACTCCCCCACTTCCTGTATGACTGGTAAATATAAAAGTGCTGTAAATAACTTCACAGAGGGACTCTTTTGTACAGTTATTAACAGGGTGCTAAGCTTGCTGTTGCCTTTGCTGTTTGTTCTATGATCTCCATGGACTTTCATCTGATCCTTCAAGGCAGCTTTCAAAGGTTTTACCACCAGTTGTTGCTACAGaacgtttttcttttctgattggcctttgtgatttttttgttaagTTTCTTGTGGTAttctagtattttttttttaccctcaGTGGAAATTTGTGGTCAACACATACTGAATAAAGTATTACAAGCTCCTTTCCCTTTCATTTTAGGGTTAAAGCATCATGGCCATTTGACTTCTGTTGGAGAGCAAGCAAGACCATGAAAATGATCGATTTTAACTGGCCGACAGGAGCTGTGATGCTCATTGTGTAGATATTGCAAACCTGAGGCAAGAATCCCCTGACTACATTCCCCACAATCCCCTGTAGAATCGCTCTCATACAGTCACAATAATGACGCATGAATGCAAATCAACTTTAGGGAATTATTAAAGTGATATTAGCAGGATCTTTTACAGAGACACTTTTGGGATTTTGGGGAATTGGACACCAAGGGTTAACCTTACACAGCATTTaagcaaaaacataattacatggTTGATTCAGCTTTTACGAGTACATCAGCAGTGTGTTACCGATCCATACGCACTATCGATTTGACAAAGTGTTCTGCATCGTTTACTTTCCAAATCAGATCTATAGATCTACTGAACTATTGACCTTTGCCATTTTGTCACGGCCTCAGGTTTTGATTTGCTATCTCAAGTGAATGGCTTGATTAATTTCCCTTACCAGGCAATCAATAACTATGATACAGATGTGATTAAGGTTCTTTCATTTGGGCCCTTTTATGCTTGGGTGAAGGCCGGCTGAGTGTTGAGGGGGGGAAATAATCAGATACTGAAAACCCAGCCTTCAGACTTCTGTTATAGCAGGATCTCTGGGGCTGGGCCACATCCAGAGATTGAGAGCCTGTTTCCAAAGCACTACATCTGCAGTTCTGATATCCTATTGAATTATTCAAGTGTAGGAAAGACTATATTATGAGGCACACCGAACGATTGTCACTTTTTTACACCATATACATGCACTTCTTGTCTGATCACAGTGCAGGTGTTTACTGACAGCTTTACTGATCTCACCGGTCCCATTTTTAATGACCTTGGCGTGTGTTTGTGGCCGACTGAACGTGCAGTATCGACCAGGCATTGGAGTTGTAATTTCAGACAAGCTAAATATATTGACCAAATGATTCTGTGTCGTACTTACTTCTCTGTCTCGGATGTGCAAGGATGCAATCGCTGGCCGAGATATCGATTGTCGTTGGGGcactaaaagaaaaagcattaaCTACTATCCATTCTGTTTGTAGATTTCAGAGGAACAGCGGTGCATACTATACTATTTGATAGGAAAAGAGTAGTGTGCGTCCTGTAGAAAACAGTAGACCTTGAGAACAAAGACTAATGACAACCTAAAGGATAGACCAGAAAGCCAAGGATCTCCATATTCTGTTTGAAAATCATGATACACGTGAAATGACACTGACATCTTTATGTGGTTTAAACACGCTGTAAGACACATTCATATACCCGATATTCAAGTAAGTATTCCAGTCTTTGTATTATCCCTTTCTTCTGAAAGGTTTGTATTGTCCAGACATGCATTTGGAGGCTATCAGGTGCTCACAGAAAGGACCGGTCCAACGCAAGGAAGCCCTGAGACTGATTTATATCTGGCATCGCTGCAAGTCAAATCCTGCTGAATCCCAATGCCAGCCACTGCAGATTTTTACTGACAACCTTTATACGTTTCTTGGCTTGCCGTCACTCCAGTGTGGGGCCAGTTCAGCTCTTTTTACTGTTGTAATATAGCTGCAAGGTGACTACTTGTAATCCAGTTTGAACTTAAAACACGAAGGAAAtggatgaaaaaagaaaagcgaaTCACTAAGAGTTGTGCGTTCTGTGCTGTTCTAGTCTAGGCGTTGTGATGTGCTGCATGTGTGTATTCCCACAGACTGTCGATAATAAAGAGACGATTACTTTTA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002180 True 3762 mRNA 0.49 6 6316286 6324559

Neighbor

gene id symbol gene type direction distance location
AMCG00002183 pank4,LOC106565907 coding upstream 20039 6287217 ~ 6296247 (+)
AMCG00002184 pank4,LOC107669004,LOC107745330,LOC107742899,LOC107560420 coding upstream 30725 6284545 ~ 6285561 (+)
AMCG00002174 NA coding upstream 74207 6229136 ~ 6242079 (+)
AMCG00002176 aldh4a1,LOC106582961 coding upstream 89456 6216381 ~ 6226830 (+)
AMCG00002175 NA coding upstream 108404 6200862 ~ 6207882 (+)
AMCG00002181 NA coding downstream 2325 6326884 ~ 6345200 (+)
AMCG00002179 icmt,LOC107737573 coding downstream 31846 6356405 ~ 6360644 (+)
AMCG00002182 rpl22,LOC107737211,LOC107593380,LOC102779685,LOC103047485,LOC108414460 coding downstream 58496 6383055 ~ 6385782 (+)
AMCG00002186 chd5,LOC102784485 coding downstream 78351 6402910 ~ 6424263 (+)
AMCG00002188 NA coding downstream 195950 6520509 ~ 6522224 (+)
G121402 NA non-coding upstream 38386 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 746039 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 1040363 5243709 ~ 5275923 (+)
G121187 NA non-coding upstream 1088187 5227674 ~ 5228099 (+)
G121178 dhrs3 non-coding upstream 1111672 5202849 ~ 5204614 (+)
G121417 NA non-coding downstream 2638 6327197 ~ 6327481 (+)
G121526 NA non-coding downstream 468417 6792976 ~ 6798043 (+)
G121680 NA non-coding downstream 1236507 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 1322159 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 1505248 7829807 ~ 7834211 (+)
AMCG00002152 NA other upstream 1089630 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 2774109 3533814 ~ 3542177 (+)
G120742 NA other upstream 3356811 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 3462159 2852154 ~ 2854127 (+)
G120518 NA other upstream 4375470 1924022 ~ 1940816 (+)
AMCG00002190 acot7 other downstream 262095 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 1069241 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 2414212 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 3519646 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 4243353 10567912 ~ 10604839 (+)

Expression


Co-expression Network