AMCG00002182 (rpl22,LOC107737211,LOC107593380,LOC102779685,LOC103047485,LOC108414460)


Basic Information

Item Value
gene id AMCG00002182
gene name rpl22,LOC107737211,LOC107593380,LOC102779685,LOC103047485,LOC108414460
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6383055 ~ 6385782 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002182
GCATATTGAAATGGGTGTTTATAAGCGTGGGGAGCAGTAGTTTAGTACGACTGGAGGTGCACGTTTTGTTTTGTACCGATAGTACCGATAAAAGGCCAGATTTCTTTAATAGTTTGTGACCGGTAGGCCGCAGAGCAGCTGTGGTTGTGATgcaattttacacattttaatcagaTCTCTGAGATTAATTAACACCGCCTGACAAGGTGTCTGATGCGCAGGGATAAAGTGTAAGATAAAAAGCAAAGCACCAAGGGTggcaagaagaagaagcaggTGCTGAAGTTCACGCTGGACTGCACCCACCCTGTGGAAGATGGCATCATGGACGCAGCGAACTTTGAGCAGTTCCTGCAGGAGAGGATCAAGGTGAACGGGAAGGCCGGCAACCTGGGCGGCGGCGTGGTGACCATCGAGAGGAGCAAGAGCAAGATCACGGTGACATCTGAGGTCCCCTTCTCTAAAAGATACCTGAAGTATCTGACCAAGAAGTACCTGAAGAAGAACAACCTGAGGGACTGGTTGCGCGTGGTGGCCAACACCAAGGAGAGCTACGAGCTGCGATACTTCCAGATCAAccaggacgaggaggaggaagaggatgagGATTAATCTCTTCACctgttttgtatattaaataaaatgtcaatatgGACAAAAC

Function

symbol description
rpl22 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

NR:

description
60S ribosomal protein L22

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002182 True 661 mRNA 0.48 4 6383055 6385782

Neighbor

gene id symbol gene type direction distance location
AMCG00002179 icmt,LOC107737573 coding upstream 22411 6356405 ~ 6360644 (+)
AMCG00002181 NA coding upstream 37855 6326884 ~ 6345200 (+)
AMCG00002180 NA coding upstream 58496 6316286 ~ 6324559 (+)
AMCG00002183 pank4,LOC106565907 coding upstream 86808 6287217 ~ 6296247 (+)
AMCG00002184 pank4,LOC107669004,LOC107745330,LOC107742899,LOC107560420 coding upstream 97494 6284545 ~ 6285561 (+)
AMCG00002186 chd5,LOC102784485 coding downstream 17128 6402910 ~ 6424263 (+)
AMCG00002188 NA coding downstream 134727 6520509 ~ 6522224 (+)
AMCG00002189 acot7,LOC107754737,LOC107693425 coding downstream 151299 6537081 ~ 6553474 (+)
AMCG00002192 gpr153 coding downstream 250152 6635934 ~ 6655887 (+)
AMCG00002194 NA coding downstream 328325 6714107 ~ 6725801 (+)
G121417 NA non-coding upstream 55574 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 105155 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 812808 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 1107132 5243709 ~ 5275923 (+)
G121187 NA non-coding upstream 1154956 5227674 ~ 5228099 (+)
G121526 NA non-coding downstream 407194 6792976 ~ 6798043 (+)
G121680 NA non-coding downstream 1175284 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 1260936 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 1444025 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 1524776 7910558 ~ 7917243 (+)
AMCG00002152 NA other upstream 1156399 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 2840878 3533814 ~ 3542177 (+)
G120742 NA other upstream 3423580 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 3528928 2852154 ~ 2854127 (+)
G120518 NA other upstream 4442239 1924022 ~ 1940816 (+)
AMCG00002190 acot7 other downstream 200872 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 1008018 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 2352989 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 3458423 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 4182130 10567912 ~ 10604839 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location