AMCG00002198


Basic Information

Item Value
gene id AMCG00002198
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6683032 ~ 6706524 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002198
TTTCTGTCCACAGAGACAGAATGTCAGAAGGAGACAGTACTGGAGAGTCTATCCATGGGAAACCATCAACAATCGGTAGCTTTTTCACACGGCTCGGGCAGaTTTATCAGTCCTGGTTAGACAAGTCGACACCGTTCTCAACAGTACGATGGGCTGTCACTCTACTTCTAACGCTCATCTACATGATTAGAGTATATATATTACAGGGATGGTACATTGTTACATATGCTCTGGgaatttaccatctcaacctgTTCATTGCTTTTCTGTCCCCAAAAGTGGATCCATCAATAATGGATGATGCAGATGATGGCCCTTCATTACCAACAAAGCAGAATGAAGAATTTCGGCCTTTCATTCGAAGGCTGCCAGAGTTTAAATTTTGGCATTCAGCTACTAAAGGAATCGTGATTGCAATGATTTGCACATTCTTCGAGGCTTTCAATGTGCCAGTGTTCTGGCCGATACTTGTGATGTACTTCATCATGCTTTTCTGTATTACCATGAAGCGACAGATAAAGCATATGATCAAGTACAGATATCTACCATTCACACATGGCAAGAGGACATACAAAGGCAAGGAAGACACAGGGAAAGCTTTtgctaATTATGTTTTGGGAGGGCTGTTCCGAATCCACATCGCAGATCAGTCGAATGTTTCATATCGAAAACCTGAGGTTCTGCAGTGCTCTACATGGCAGTTTTTACCAGAGTACTATCAGCAGCTGCAGGTGTTGAGGTTTGCTGTGGAGGAGATCAATAACTCCACCTCTCTCCTGCCCAACGTGTCCCTGGGCTACGACCTCTTCGACTACTGCTCTGATTCACTGAATCTCCAGGTGGCCTATGACTTCCTGTCCAGCAGCCTGGACAGATCCGTTCCGGTTCTAGACCGTTTCCTAGGGTATCGACCTAAAGTCATCTCTTTAATTGGCCCTTTTGGGAGCACTGAGAGCCTTATCATCGGACCGTTGTTCATGTTCTATGATATTCCAATGATAAGCCCCGGAGCGTCGAGTATTCGTTTGAGCCATGAACCCTTTTTTAACTCATTTCTGCGCACGATCCCCAGCGACCTCTACCAGGTACGCGCTATTGTCCAGCTTCTGCAGAGGTTTAAGTGGAACTGGGTGGCATTCATTGGCAGTGACAATGACTACAGCCAGGACGCTCTTCAGGTCTTCAACGAGGAGACGCAGCGTGCTGGCATCTGTGTGCCTTACCAAAACACTATCCCTCAAGACCCCACTGGAATGCTCAGTATATTTCGCAAGATCGAGGCTCTCAAAGTGAGTGTCGTGGTGGTGTTCGCCACCCAGGACCTGGCTGTCCCGTTCATCCAAGCTGCTGTAGCGAACGATATCCGTGACAAAGTGTGGATCGCCAGCGAGGCCTGGTCAACGAACCAGTTCCTGTTCAAATTGCCAGGGATTGAAGCGATCGGCACCGTCCTGGGGATAAGCATCAGTGGACTGGGGCCCTTGCCTGGGTTTAAGGAGTTTGTGTACAGAACCATAATGCAAAGCGATCACGAAGCCTGTGCACAGACACAGCGTCCAGTGACTGAGGAAATGTGCAATCAGGATTGCCCAGAGTGTTCTTCTCTCACGCCCGAAGCTCTCCTGGAAGCAGACCCGACTTACAGTTTTAATGTGTACTCGGCTGTGTATGCTGTTGCCCATTCTCTCCATCAGTTACTGGGGTGTGGGGCAAATACCTGCACAAGGTCTGGACCGGTCCTGCCCCATATGGTTCTTGAAGGACTGAAGAAAGTGGACTTCATGTTAAAGGATCGTGTGATCAATTTTGATCAAAATGGAGACCCAACTCCCTACTATGACATTGTGGTTTGGGACAGGACCTCACTCGAGTTCCCCAAGAGGGTTGGTTTATACACCTCCGATCCAGCCCCCCGATTCACGCTCAACGAGAGTCTGATTCCGTGGTACACAAATGGCAGGGTACCGATATTAATATGCACTGCAGAATGTGAGGAGGCTGATCCTTACAATTGTACAAAGTGCGAAGACGACGAGTGGTCCGGTCAAGGAAGCACGTCCTGTAAAAAGCGCACCCTACAGTACCTCCACTACACCGACCACTTCTCCATCGCGCTGGTGGTGTCGACGGTCATCGCGCTCGCCCTTTCCATCGCCATCACCATCCTCTTCGCCCGAAACCGCGACACCCCGGTGGTGAAGTCTGCGGGGGGGACGATGTGCTTCTTCATGCTGAGCTGCTTGAGCGTGGCGTGCATGGGCATCTTTTCTTATATCGGCGAGCCCGTGCTGGTGAAGTGTACCTTGAGGAACCCGGTGTTCGCCGTGTTCTACACCGCCTGCCTCTCCTGCCTCGCCGTCCGCTCCTTCCAGATCGTTTTCATCTTCAAAATGGCGGCCCAGCTACCCAAAGCTTATGACTTCTGGGTCAAGCACAATGGGCAGTGGCTCGTCATCGTGGCATCCGTGGTCATCCAGATCTTCTTGTGTGGCATCTGGATTGGCACTGAAGGACCTCAGCCCTTCAGCGATGCCGCAGTATACATCGACCAGATCATCGTGAGCTGCACCATGGGAGGTCTGCGGGCGTCCCTGCCGGTGACATTGTTCGTCAGCTGTCTCAGCGTTGCCTGCTTCATCTTCTCCTACATGGGCACCGACCTGCCTAAAAACTACAATGAGGCGAGGTCTGTCACTCTTAGTCTGCTCATCTTCTTCCTGTCATGGATTTCCTTTTTCACCGCTTATATTGTGTACAGTGGGAAATATATCCAGGCTTTCAATGCTGTCTCCGTGCTGGTCAGTTTGTATGGAATACTCGCAGGCTATTTTTTCCCCAAGTGTtacattattctttttaaacCTGAACAAAACACGACGGCACATTTCCAGACCTGCATTCAGAGTTACACCAAATCTATTAGGGCACCCGCCATGGCATCCTGCGCATCATCAGATTTCAGACTACAGGGGGATTATATATTGGGAGGACTTTTCGAAGTTCATAACTCTCTGAACTATCAGTCAGAGCACAACAGACCTGAAGCCTTACAATGCTATCCATTGGACTTTTTGACTTCAGGCTATCAGCAGCTCCAGGTGATGAGGTTTGCTGTGGAGGAGATCAATAACTCCAGCTCCCTCCTGCCCAACGTGTCCCTCGGCTACCAGATCTTCGACCACTGCTCCGATACGCTGAACTTTCCGTCTGTCTTTGACTTCCTCTCCGTGAATGGGTCCGTCCCCGTtaagaagaagaacagagaTTATCGACCGAAAGTCATATCTGTCACCGGCCCATTTGGCAGCACTCAAACCATTACCATTGCGCCGCTATTCATGGCAAACCTCATTCCAATGataaATCACGGATCGTCAAGCGCACGCTTAAGCGACAAAACTGTATTTCCTTCCTTCCTACGAACAGTTCCGAGCGACAGAAATCAAGTGCAGTTGATTATTCTCCTCCTGCAGAAGTTCGGCTGGAACTGGGTCGCCTTCATTGGTGGCAACAACGATTACAGCCGCGATGCGCTGCAGGTCTTCAGCGAGGAGATCAAGTCCGCCGACATCTGTCTGGCTTACCAGGGGACGGTGCTGCAGAAGTCCCCGAGCATCGGCGCCATGCTGGACCAGATCCTGCAGCTCAAGATCAATGTGATCGTGGTGTTCGCCCCGCAGGAGTACGCGGTGGCTCTGATCGAGACCGCCATCCAGAACAACGTGCGGGACAAGGTGTGGATCGCCAGCGACAGCTGGTCCTTGAACCCACACCTGCCCAGGAAGGAGGGCATTCGGGCCATCGGCACCGTCATAGGGATAACCAGCAAGTCGCTGTCTCTGCCAGGCTTGGAGGAGTTCATCTATAGGACAATGTCTCGCACTGACCAGGGCCCTTGCGCTAAGACACCATCCAACGCAAGTGCGCAGACCTGTAACCAAGATTGCCCGTCGTGCGCCGTCGTGAATCCTAAAGTCATCGTCGATGAAGACCCGACATATACGTTCAGCATCTATTCGGCTGTGTACGCTGTCGCCACTGCACTGCACCAGTCACTGGGCTGTGGCGAGAAAGGGTGCGCAGGTCCTGGCACAGTTCACCCGTACATGGTTTTcgaaaaactgaaaaaggtgAACTTCACATTGCACGGCCGCGTCGTAGAGTTTGATGGGAACGGAGACCCGCCGGCCCATTATGATGTTTTATTCTGGGACTGGACCTCGTCTCCTCTCTTCAAGAAGATCGGCTCATTTTCTAAACAGCCTCGAACCAGTTTCTTTCTAAATGAGAGTCTAATTAGGTGGCACACAAATAGAAcgGTTCCTGTATCGGTGTGTTCAGAGGAGTGTAAAGTGGGTTATATAAGGAGAGTCACAGGATACCACAGTTGCTGTTTTCAATGTGAGGTCTGCTCGAACGGGACGTACGTCAATCACACAGCTGATCTCTACACCTGTAAGAAGTGTGAAGATGATGAGTGGTCGAATCACGGAAGCACTTCGTGCAAAAAGCGCTCTGTAGAGTATCTGCACTTCACGGAGTTCGTCTCCATTGGACTAATACTGTCTGCAGGTTTCCTGATCATTGTTTCAGTGGCTGTCAGCTGTGTATTTGCCTGTAACTATAACACTCCGGTTGTGAAGTCTGCGGGGGGAAAGATGTGCTTCTTCATGTTGAGCTGCTTGAGTGTGTCGTGCATTAGTGTCTTTGCCTACATCGGGGTCCCTGGGTGGGGGAGCTGCATCTTCAGAAACCCAGTGTTCGCCCTGTTCTACACGGCCTGCATCTCCTGCCTTGCCGTCCGCTCCTTCCAGATCGTGTTCATCTTTAAAATGGCGGCCAAATTGCAGTTTTTGCCTTCAGGCTATCAGAAGCTGCAGGTGATGAGGTTTGCTGTGGAGGAGATCAATAACAACCGTTCACTCCTACCCAACGTGACCCTCGGCTACGAGATCTTCGACTACTGCTCAGATATGCTGAACTTCCCGGCGGTCTTTGACTTCCTGGCCAACAACGGATCGGTTCTCGTTAAGACCGGTCTGAACAGTCAATACAAAGTGATTTCTGTGACCGGTCCGTTTGGGAGCACCCCCACCATTACCATCGCACCGCTTCTCATGTCTAAATTAATTCCCATgACATTTAAGTGGAACTGGGTGGCGTACATTGGTGGCGACAATGACTACAGCAACGATGCTTTTCAGTTCTTTGTGGATCGCATTGGACTGACCGACATCTGCTTGGCTTACCAAGCCATAGTTCCCAGACAGTCCTCCAACATTGGTGAGGTCCTCAACAAAATAGCAACCCTTAATGTCAGTGTGGTTGTGATATTTGCATTGCCAGAAGTTGCAGTACCAGTCATCCAAATGGCTATTAATACAAAAGTACGCAACAAAGTGTGGATTGCCAGTGAAGCCTGGTCCTTGAACCAGCAGCTGCTGGGGATTACAGGAATTGAAACCATTGGAACTATCATTGGGGTAACCCTGAATGGACTCTGGACACTACCTGGTTTTGATGCGTTTGTCCAGAAAACTATGGCTCGTGGAGAAACCTGGAGCTGCTCAAATGGACAACAGATGTCCGCAGTGGAGACGTGTAACCAGTTTTGCCTACAGTGTTCCAATGAATCCTCTAAGGATATCACCAGTGAAGACCCAACCTTCAGCTTTCCCATTTACTCGTCTGTTTACGCTGTTGCCCACGCGTTACATCAGGCACTGGAGTGCAACACGACAAGCTGTCAAAGAGCAGGAACAGTCTATCCCTATATGGCCCCCGTCCTGGTGTGTTCCTCCGAATGTAAGGACGGTTTCAGGAAGAAACAGAGAGGCATCCACAAATGCTGTTTTGATTGTGAGCTCTGCCCTAATGGGACGTTTGTCAATTACACAGCGGATCCCGAAACCTGTAAGGGATGTGGAAAGGACGAATGGGCAGACGAAGGAAGTACTTCATGTACCATGCGCTCTATCGAGTACCTCCACTACAGAGAGCAAATCTCCGTTGGAATAATGCTCTGCTCAAGCTTGGTGTTTTTCCTGTCGGTGGCCATCACCATTCTCTTCGCTCGTAACTGCAACACCCCTGTTGTGAAGTCTGCGGGGGGGAAGATGTGCTTCTTCATGCTGAGCTGCCTGACCGTGGCGTGcatcagtgtgtttttttatgtgggCGAACCTCTGATGCCCAACTGTATGTTGAGCAACCCGGTGTTTGCTGTGTTCTACACGGCCTGCCTCGCCTGCCTCGCCGTCCGCTCCTTCCAGATCGTGTTCATCTTTAAAATGGCGGCCAATCGTGTATCTGGACAGAAAAAC

Function

GO: NA

KEGG:

id description
K04624 TAS1R1; taste receptor type 1 member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002198 True 6323 mRNA 0.50 23 6683032 6706524

Neighbor

gene id symbol gene type direction distance location
AMCG00002193 NA coding downstream 15581 6666114 ~ 6667451 (-)
AMCG00002191 espn coding downstream 182760 6451274 ~ 6500272 (-)
AMCG00002187 NA coding downstream 235413 6428365 ~ 6447619 (-)
AMCG00002185 rnf207b,LOC108434591,LOC107593377,LOC107712689,LOC106572244 coding downstream 301601 6357657 ~ 6381431 (-)
AMCG00002178 NA coding downstream 420727 6258047 ~ 6262305 (-)
AMCG00002196 NA coding upstream 6473 6712997 ~ 6713197 (-)
AMCG00002197 NA coding upstream 23110 6729634 ~ 6735812 (-)
AMCG00002199 tprg1l coding upstream 79603 6786127 ~ 6792271 (-)
AMCG00002200 NA coding upstream 91363 6797887 ~ 6824699 (-)
AMCG00002201 prdm16 coding upstream 217474 6923998 ~ 6939545 (-)
G121447 NA non-coding downstream 258734 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 269758 6413013 ~ 6413274 (-)
G121444 NA non-coding downstream 275117 6407705 ~ 6407915 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding downstream 297113 6382433 ~ 6385919 (-)
G121403 NA non-coding downstream 405130 6277468 ~ 6277902 (-)
G121689 NA non-coding upstream 854553 7561077 ~ 7562747 (-)
G121716 NA non-coding upstream 951308 7657832 ~ 7658851 (-)
G121718 NA non-coding upstream 956462 7662986 ~ 7663677 (-)
G121754 NA non-coding upstream 1123669 7830193 ~ 7845316 (-)
G121789 NA non-coding upstream 1309540 8016064 ~ 8017075 (-)
AMCG00002167 NA other downstream 667639 5975725 ~ 6015393 (-)
G120993 NA other downstream 2463155 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2896488 3784236 ~ 3786544 (-)
G120907 NA other downstream 2966780 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 3216571 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 1120117 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 2902226 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 3050901 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3123995 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 3130394 9836918 ~ 9853075 (-)

Expression


Co-expression Network