AMCG00002199 (tprg1l)


Basic Information

Item Value
gene id AMCG00002199
gene name tprg1l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6786127 ~ 6792271 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002199
CGCTTCTGCTCCCACATGCACAGCTGCAGGTTCAGTGCGCAGAATGCGGAAGCACGGCGGAAGTGGAGCCGCAGTGACGTGTGCGGACTTCCTGTGGCTGCGGGCGGAGGGCAGCTCTGTTAGTAAACACGCCGAGGAGCAGCGCTCGCTGTCGGACTGGGCCTGTCATTTCTCCGGCTCTGAGCTCCGCCCCAGGAACCCCGCAGATAAACCCCCATCGGCGCCATGCTGCAGCTCAACGACTCGGTGGAGCCGGAGAGCCCCGGCGCGGCGGTGCTGCACACCGGGGAGAGTGAGGACGGCGTGGAGGTGGCGTTCACCCCGCCGGGGCCCGGGGGACGCCAGCCGCCGCACGGCTCTGTCGGCCTGAGCCGGGGCGGCGCGTCCGTGGCCTGCTGCTCGCCCCTGCAGACGCTGACGCCCTTCCAGGTGCACAACCCCACCATGCAGGCCAAAGTGAAGGACTACTTTGTGTTCaggCCAGGGACCATTGAGCAAGCTGTGAACGATATCAGGACGGTGGCCATGCCTACAGAGGACGGCGAGGTGCAGAGCGTCTGGCTCCTGGCGGAGATCGATCACTGGaacaacgagagagagaggctggtgCTCATCACCGACCGGTCACTCCTGGTGTGTAAATACGACTTCATCAATCTGCTGTGCCAGCAGGTGATCCGAGTGTCTCTGAATGCGGTGGACACCATCTCCATTGGCGAGTTTGAGTTCCCGCCCAAATCCCTCAACAAGAGGGAGGGCTACGGCATCCGGGTTCAGTGGGACAAACGCCCCCGGCCGTCCTTCGTGAACCGCTGGAACCCCTGGTCCACTGACATGCCTTACGCCACCTTCACGGAGCACCCCATGGCCAACGCGGACGAGAAGATCGCCTCCCTCTGTCAGATGGAGAACTTCAAGACCCAGCTCGTCCAGGCGGTGAAGAAGGCCCACAAGGAGAACCCGCTGCCGGGCAGAGCCAACGGCGTGCTGATCCTGGAGCGGCCCCTGCTCATCGAGACCTACCTGGGCCTGATGTCCTTCATCAACAACGAGGCCAAGCTGGGATATTCCATGACCAGAGGCAAAATAGGCTTTTAACTCCCCTCTTTCCCCTCCTGGTCTTTTTATTTCACCGATTGACTCATTCTTCTATGGTGTGAGctaaaaatacatctgtgtaCGATAACTGTGACCAGGTCTCCACCCCTCTTACCTCCAGTCAACACAACTTGTGGGAAAAGAGCACATTTTAGGGTTTAAGTGCATGAGCCAACCACCCGTGGCCAGTGATTTAACCGCCGTTTGCTGTAAATTGTCATGCAGTTTCTCCGTTCTGTTGCGTCTCACTCAGCAAAGAGCTTTTATcaagaaagttatttttctagTATGTTTTCTGTACTTTGGGAACGGTACGAATAGGGCGACATGAAGGTTGGATACGTTTCTTGTGGGATACAGGCATTGAGTCGGCTATAATGAATATTCTGAATATTGTCCTTTTGTGGTTTGCAGCTGTTTAAACGCTAACAGCGCCGTACAGTGTTGCTTCATCACCTGTAGCCGCTGCCCTCGTCACAGTGAAGGGATTATTGTTCTTGTCCGAATCTGAAAGAGGCTCGCTGTTCTTTTCGTGGTAAAGGGACATTAACTGTGGCTTTAACATtatcgcattaaaaaaaacctcaTTAGAGAACGCCTCAGCATTAAAAGAGTAATTTATTGTTGTCATCGGTGGGTGCTGAGAGAAGTTGAAGTCCGTCTTGAACCAGGGAACATAAAGACCACCTGACCGTTGGGAAGGCTAGTGTGCTGTTAATTTCCACTAATGACTGGCTGGTAGAGGGCGATGAagttgccttttttgttttcttttcaatcaaACTAGGAGTTGATGTTTGCAGTTCTCAAATTGCTAAAAAatttctgattttgtacgtGTGACCTTGCACTAAACCACGTAGGTTCATATGAGAATAGGGCCAAATACGAATGGGTTTCATCCACAATATTTCAAtggttttgttaaaataatcatATCTGTTGTCTTGGGACTGCTGTAGTGACAGTAATGTGCAATGCTTCTCCATAATGTCATTTTATGGTTCCGATTCCCCACTGCAGATCCCAGAGTGGGCACATTGGTGTTTTTAGTGggatcagatttgttttcaaagcGTTTATCAATTCAAGCCATTGTTCATGAAAAcacttatataaaataaaaatataacgtATGACTGTTGGCCAGAGTAAAGAGATTTAATTCCAGTAACATTTCATATGCACCTTAGATTAATTTAGGGTGATGCCATCAGTGCTGGTTTAAACCTTTTCAGAGAAGCTGTGTTGAACCGGCGATCGGCCTTTGGTACAACTTGAGATTTCAAGAGGCAACTAACTACGTTATTGTTTGTCCACCCTTTGTTATGAAACTATGCACTGTGGTTTTGTGGTACCAAAGAAGAGAGTGATGTCAGGGTTTATTTCCCCTTTTAAGTCCTTCGGGGGATATCTGCAGCTCAGTCGGGAGAGGCTTCTTGTGTCTGTAGCTGTTTACTACCTGCATGTGCATGGCTGTTGCACGTCTTGCTGCATGCACGTCTGCTACGTTCGATTTGTTCAGTGTAATCTGGGCGAAATATACCGTTCCCGAGAAATGTAACCACGAGAGAgagatttgaaatgttaattagcACATTATAAATCACTTGTTTAgtttgggggggtgggattTGTTTCATATCTTTCAATATGTGAAAATTGATGACTGACTGCTGTACAAACATGCATCCAAATCCAGTTCAATATATTTCTGGAAACAGTACGAgtctttttgttcttgttttatttgtatttttgaagcttttgattattttttttaagatgtaacTTGTATTCTAGATTAAGAAATGAGGATAATGCAACAAGTTATATATAGgcagcaaaatatatatatctactcTGACATTAGGAGTAGTTGTGACCTGACCCAGTTGTTTTATATGCATTGTTCATTTGATGGTAGCCTGTATGTTGATGAATATGTGACGGTATTACTGGGTTCAGGGATGATAAACGGGGTCTATGGTTGATGTGTAAACTGCAGGACTGTCAGTTCAGTGTGACTCAGGCTGAACATTGAATTACTGGTAGTGTATGGTTTAATAACCATAGAAGTGGGAATTGCCTGCATTAATGctgttctgtactgtattttaggAGAGCTTGACAAAGAAATCTATACCTATAGGAATATAAACTTGGCATCTCTTCCATGCATGGGGTGGGAGTGAGAAATGAAGTCCCTTTTTTCTCCAGCAGAAGTTGCCAGAGTCATTGTCACTGTTTTTGGTACTTCTGGTCGCATCATGAACAGGGGTTTGAAATGTACAGCAGGAATCCGCTACTAAAGGGTAACTGCACCTGTTAAGCTATTTACACATATTGCAAATTTCTGCAAAAGGACTGATTTTCAGATCAATGAAGGAAAAGAAGTAGGCATTCAATATAAGGGCgttctttccatttcttttttaagcTATTTGcacttcatattttaataactgtatTTGCCAGTTAACTATtgcattaataatttattgcCAAGCAGCAGAGACCATGtttgtacatttctttcaaGATGGCTAGCTAAATATGTGAGACGGTGAGAGGAACA

Function

symbol description
tprg1l Predicted to be active in cytoplasm. Orthologous to human TPRG1L (tumor protein p63 regulated 1 like).

NR:

description
PREDICTED: tumor protein p63-regulated gene 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002199 True 3676 mRNA 0.47 6 6786127 6792271

Neighbor

gene id symbol gene type direction distance location
AMCG00002197 NA coding downstream 50315 6729634 ~ 6735812 (-)
AMCG00002196 NA coding downstream 72930 6712997 ~ 6713197 (-)
AMCG00002198 NA coding downstream 79603 6683032 ~ 6706524 (-)
AMCG00002193 NA coding downstream 118676 6666114 ~ 6667451 (-)
AMCG00002191 espn coding downstream 285855 6451274 ~ 6500272 (-)
AMCG00002200 NA coding upstream 5616 6797887 ~ 6824699 (-)
AMCG00002201 prdm16 coding upstream 131727 6923998 ~ 6939545 (-)
AMCG00002208 mfn2,LOC107748965 coding upstream 283478 7075749 ~ 7086413 (-)
AMCG00002209 NA coding upstream 298569 7090840 ~ 7109181 (-)
AMCG00002210 clcn6 coding upstream 372826 7165097 ~ 7177984 (-)
G121447 NA non-coding downstream 361829 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 372853 6413013 ~ 6413274 (-)
G121444 NA non-coding downstream 378212 6407705 ~ 6407915 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding downstream 400208 6382433 ~ 6385919 (-)
G121403 NA non-coding downstream 508225 6277468 ~ 6277902 (-)
G121689 NA non-coding upstream 768806 7561077 ~ 7562747 (-)
G121716 NA non-coding upstream 865561 7657832 ~ 7658851 (-)
G121718 NA non-coding upstream 870715 7662986 ~ 7663677 (-)
G121754 NA non-coding upstream 1037922 7830193 ~ 7845316 (-)
G121789 NA non-coding upstream 1223793 8016064 ~ 8017075 (-)
AMCG00002167 NA other downstream 770734 5975725 ~ 6015393 (-)
G120993 NA other downstream 2566250 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2999583 3784236 ~ 3786544 (-)
G120907 NA other downstream 3069875 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 3319666 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 1034370 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 2816479 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 2965154 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3038248 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 3044647 9836918 ~ 9853075 (-)

Expression


Co-expression Network