AMCG00002207


Basic Information

Item Value
gene id AMCG00002207
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7152473 ~ 7153321 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002207
ATGGCAAAGTTAGACGTTTTCTATGGATTTCTTATTCTGTTTTTGCTGACTAGCGCGGCCAGGGCAAGTTCTTTGTTCAACAGGTACAATGCCCAGGAACTCGACAGTCTGAAGGATTTGATTGAGCAGCTGGAGGAGAAGATGACTCCCAATGACGAAGGTGGACTCTACCCGGGATCCGAAGTGTTCATGGACTCACTGGAAGACGATGCTCTTTCCCCTGAAATCCTTCGTCAACCAGAAGAGAGCCCGTCGCTGAACCCCAGCCGACCACTGCAGGAGACTCCAGCGAGGTCCCACTTCCGAGACCTTGCCGGCTTGACGAGGACCGCCAAGTCCTTCAGCAGTTGCTTCGGGAACAGGATTGAGAGAATAGGATCGTGGAGTGGACTCGGGTGCAATACCTCCAAGCTTGGTCCTAAGAAGAGGCTATTCGGGAACTGA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002207 True 444 mRNA 0.52 3 7152473 7153321

Neighbor

gene id symbol gene type direction distance location
AMCG00002204 NA coding upstream 2060 7145725 ~ 7150413 (+)
AMCG00002203 LOC106926566,LOC107691064 coding upstream 24013 7120579 ~ 7128460 (+)
AMCG00002202 LOC107595762,LOC107602448,LOC107735586 coding upstream 33287 7110777 ~ 7119186 (+)
AMCG00002195 wrap73,LOC107748967,LOC107595759 coding upstream 366499 6773923 ~ 6785974 (+)
AMCG00002194 NA coding upstream 426672 6714107 ~ 6725801 (+)
AMCG00002205 NA coding downstream 3166 7156487 ~ 7157849 (+)
AMCG00002206 NA coding downstream 6311 7159632 ~ 7166827 (+)
AMCG00002211 mthfr coding downstream 25118 7178439 ~ 7191115 (+)
AMCG00002214 plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766 coding downstream 165654 7318975 ~ 7323901 (+)
AMCG00002213 plch2,LOC107602463 coding downstream 172669 7325990 ~ 7378440 (+)
G121526 NA non-coding upstream 354430 6792976 ~ 6798043 (+)
G121417 NA non-coding upstream 824992 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 874573 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 1582226 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 1876550 5243709 ~ 5275923 (+)
G121680 NA non-coding downstream 407745 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 493397 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 676486 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 757237 7910558 ~ 7917243 (+)
G121767 NA non-coding downstream 792044 7945365 ~ 7953624 (+)
AMCG00002190 acot7 other upstream 549865 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 1925817 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 3610296 3533814 ~ 3542177 (+)
G120742 NA other upstream 4192998 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 4298346 2852154 ~ 2854127 (+)
AMCG00002215 NA other downstream 240479 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 1585450 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 2690884 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 3414591 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 3561478 10714799 ~ 10753893 (+)

Expression


Co-expression Network