AMCG00002210 (clcn6)


Basic Information

Item Value
gene id AMCG00002210
gene name clcn6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7165097 ~ 7177984 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002210
GGGAAAATGGCGTGCTGTGGGAGCTGTCTGTGCTGCCAGTGCTGCTGCAGGGAAGGGGAGACCAGGACACCCGAGGAGCTGACAATTTTAGGGGAAACTCACGAGGAAGAAGATGAAATCCTGCCCAGGAAAGATTATGAGAGCTTGGACTATGACAAGTGCATCAATGATCCATACTTGGAAGTTCTGGAGGGAATGGATAATAAGAAAGCCAGAAAGTATGAAGCAGTGAAGTGGATTGTTGTGTTTGCCATTGGAGTCTGTACTGGATTGgTGGGCCTATTTGTTGACTATTTTGTACGACTGTTTTCTCAAATCAAGTTCAGCATCGTTGGAAGATCTGTGGAGGATTGCAGTGAAAAGGGCTGTCTTGCGCTGTCCTTACTTGAACTTCTGGCTTTTAATGCGACTTTCATCTTTATAGCCAGTGTACTCGTTCTCATTGAGGCAAGGTCGGGTATACCTGAGATTAAGAGCTATCTGAATGGCGTGAAGATCCCAGGCATCGTCCGGATGCGAACCTTTCTGTGCAAGGCTGTGGGAGTCCTGTTCACTGTGGCTGGAGGGCTTTTTGTTGGGAAAGAAGGCCCAATGATCCACTGTGGTTCTATTGTAGGAGCAGGACTGCCTCAGtTTCAGAGCatcacctttaaaaaaatcaacttCAACTTCCCCTACTTCCGCAGCGACCGGGACAAGAGGGACTTTGTGTCGGCAGGGGCGGCTGCCGGTGTAGCAGCTGCTTTCGGGGCCCCTATTGGAGGGACCCTGTTCAGTCTGGAGGAGGGCTCATCCTTTTGGAACCAGGCTCTCACGTGGAAAGTGTTGTTCTGCTCCATGTCCGCCACCTTCACTCTCAATTTCTTTCGCTCGGGACTCCTGTACAACAGCTGGGGCTCCTTCCAGCTCCCAGGGCTGCTCAACTTTGGAGAATTTAAGTGTGCTGACGGGGACAAGAAGTGTCACCTTTGGACTGCAGTGGACCTGGCCTTCTTTGTTGTCATGGGCATAGGCGGGGGCCTGCTGGGGGCCCTGTTCAACTGCATGAACAAGAGGCTGGCCAAGTATCGCATGAGGAACGTGCATCCCAAAGCCAAGTTTGTCAGGGTCTTGGAGAGCCTGCTGGTCTCAATGGTGACGACGGTGGTGATCTTTGTGGCCTCCATGACACTCGGAGAATGTCGAGACCTGTCTTCACCCACCTCTAACAACACCACCTCCCTGCTGCAGGAATCTGCCTCTGAGGATGTCAACTCGACCATAAAGCAGTTCTTCTGCCCCAATAAGACCTACAACGACATGGCCACACTCTTCTTCAATCCCCAGGAGGTGGCCATTCACCAGCTCTTCCATCAAGATGGTACCTTCAGCCCCGAGACTTTGACCATTTTctttgtgctgtattttttgCTGGCCTGCTGGACATATGGCGTGTCTGTGCCGAGTGGCCTCTTCGTGCCATCCTTGTTGTGTGGAGCTGCTTACGGCCGACTGGTAGCCAACATCCTGAAAATACATTTAGGTATGGACATTTACTCTGGGACCTTCGCTCTGATTGGTGCAGCTGCCTTCCTCGGGGGCGTGGTCCGGATGACCATCAGTCTGACTGTCATTCTGATCGAATCGACCAATGAAATCACTTACGGTCTGCCAATCATGATCACTCTCATGATCGCTAAGTGGACGGCAGATTTCTTCAACAAGGGCATCTATGACATCCACATCATGCTGAGGGGGGTGCCACTGCTGGAGTGGGAGACGGAGGTGGAGATGGATAAACTGACGGCTAGCGACATCATGGAGCCCAACCTGACCTACGTGTACCCTCACACCCGAATCCAGTCTCTGGTCAGCATCCTGAGGACCACCGTGTACCATGCCTTCCCCGTGGTCACAGAGAACCGGGGCAACGAGAAGGAGTTCATGAAGGGCAACATCCTCATCAGCAACAACATCCGCTTTAAGAAGTCCAGTGTCCTGACCCGGGCCGGGGAGCAGAGGCGGCGCAGTCAGTCCATGAAGTCGTACCCATCCAGCGAGCTGCGCAACGTGTGTGATGAGCAGGTCAGCGTGGAGATGGCCGAGGAGGGCCAGGACATCCTGCAGCAGATGCTGGACAGCAGGCACATCCCCTACCCCAACCTCTACCCAGACCAGTCCCCCAGCGAGGAGTGGACCATGGAGGAGCGCTTCCGACCTCTGACCTTCCACGGCCTGATCCTGCGCTCCCAGCTGGTCAACCTGTTGATTCACGGCGTGTGTTACGCAGAAAACCAATCGAGCGCCACTCAGCCCCGATTGTCATTCGCAGAGATGACTGAAGACTACCCTCGCTACCCTGATATCTATGACCTGGACCTGTGCTTACTCAACCCACGGATGATAGTGGATGTCACACCATACATGAACCCTTGTCCGTACACTGTGTCCCCAAGCACGCGCGTGTCCCAGGTGTTCAACTTGTTCAGGACGATGGGATTGAGGCATTTACCTGTGGTCAATGCAGTAGGAGAGATCGTTGGGATCATCACCAGACACAATCTAACCCACGAGTTTCTTGTCGCGAAACTTAGACAGCTCTACATTACCGTCTGAAGTTCTCCTTCGCTCTCCCGGTCCAAGACCCTCTCATGTGGGGGGTTGGCCCTCGCCGCTTCAGGCAGGACTATGGGGGCCAAGACATGCTTGTCAAGAATCCCAGGAACCGTCCAATCTCTGTTATTCCTAAAAGACCACGGGTTGCTACAGCCCCACCCAGGGAGTCAACCCTCCAGCACTGCAACACTCGACCACTCCCACTCGGCACACCTCATACTTCGAGACTTTACAGACACTGGGATGTTTGTTGGATGAACAgttttgcagaaaatgtaaGAAGAAACGTCAGATTTAACCATCATACAGTTATGAAAGTGATTTTCAATGGGTGAAACATTTAACACCCTTCTTGGTTACAGGTAAGGGTAATCAAGAGCAACTCCTCAATCCCTGTGGCTCTTCGTTTgcacttttgtgtgtttgtttttgtattgttttattcctctcactatcagtatatatattacacttgaatgttttattaagcCAGCATAGTTTCTAATTAGTGATTGTTAAAATAAGGATGGAATAACTTTGAAAACGCAAAGTTAAACTAAGACCACTTAATTTTGATAAGCTATCTGACTGTTCAGCTAATTAGATCTGAAGTAAACTAAGAAAatggtgttaaaaaaagaacaatgaaaataaagagtCAGTGCTGCTTCCAAGCATTTGATGTAAGAAGTGAGAAAAataatcacttaaaaataaagaatgaatggagcaaatatttcaatttacacTCCAAATCAGATTGACTGAACCGGGGTAATTCTCCATTCTTTGgattttctatatattattgcaCTACATGAGTTTATAATTATAAAGGTTACCAGGCAGGCAAGAGTACAGATCTTTAGTCACTACATATTAGTGATTGTATATTGTGAGAAATTATCAAGCAGAACAACACTAATCTATAGATCAGTCTTGGATACCTTTCTTACTGTAAAGAGTGGGAGAGGTTGACATATtgggatataaaaaaaaaaagtagtgttGAATGAAATAGTCTGATGCACCATCCTTTGAATTTCTAGTATTCataaaagttttgttttctgtgatcatattaatgtttattttgactgATACATTCCCTctaaggaaaaaacaaaaccatgatgCAATGGagtttcatttatttccctCTACAACTGACATAGTAGTTAAATGTGTCCTCTCATAttcatgtgtatgtgtttaaagtgtttttcttgtgtCTAATAATCAATTTCAAGGAATTGACTTCATTCCAACAAGGTGGGTTGTAGTCGACtccaagggagagagagactgcttgtaaataatactaataatattatgaCACATTTATTGTACAGTACATGCCCCCTTTTTTTGGTTGAATGATACatttgaagatttatttttggttatatatgttttaaaatcttttgCTGCCATTTAAAATTGAGCCAGTAAATGCTCAGAAAGATGGTCACTAGTCAAATCCCAGCATAAAAATCTAGATTTCAAACAGAGTGCAGAATATTCTCCTGTtctttattaatgaacaccaggCTTTAATCTTTAACAGAAAAGCAGTTAAATGTAGACGCTCTTGAGCACAAGCATTGATCCATTCcttattaattgaaataaaggtTACTAGAATAACTCAGATATTACAGACTGGGGCATTTTTTTAAGTAGACCTGTGCATATgtaattgggggggggggggg

Function

symbol description
clcn6 Predicted to enable chloride transmembrane transporter activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human CLCN6 (chloride voltage-gated channel 6).

NR:

description
PREDICTED: chloride transport protein 6 isoform X1

GO: NA

KEGG:

id description
K05015 CLCN6; chloride channel 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002210 True 4310 mRNA 0.46 23 7165097 7177984

Neighbor

gene id symbol gene type direction distance location
AMCG00002209 NA coding downstream 55916 7090840 ~ 7109181 (-)
AMCG00002208 mfn2,LOC107748965 coding downstream 78684 7075749 ~ 7086413 (-)
AMCG00002201 prdm16 coding downstream 225552 6923998 ~ 6939545 (-)
AMCG00002200 NA coding downstream 340398 6797887 ~ 6824699 (-)
AMCG00002199 tprg1l coding downstream 372826 6786127 ~ 6792271 (-)
AMCG00002212 NA coding upstream 32282 7210266 ~ 7212964 (-)
AMCG00002219 ski coding upstream 387415 7565399 ~ 7582098 (-)
AMCG00002218 ski,LOC106572818 coding upstream 468671 7646655 ~ 7647629 (-)
AMCG00002221 prkcz,LOC106572815 coding upstream 513976 7691960 ~ 7719401 (-)
AMCG00002220 prkcz coding upstream 618739 7796723 ~ 7800503 (-)
G121447 NA non-coding downstream 740799 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 751823 6413013 ~ 6413274 (-)
G121444 NA non-coding downstream 757182 6407705 ~ 6407915 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding downstream 779178 6382433 ~ 6385919 (-)
G121403 NA non-coding downstream 887195 6277468 ~ 6277902 (-)
G121689 NA non-coding upstream 383093 7561077 ~ 7562747 (-)
G121716 NA non-coding upstream 479848 7657832 ~ 7658851 (-)
G121718 NA non-coding upstream 485002 7662986 ~ 7663677 (-)
G121754 NA non-coding upstream 652209 7830193 ~ 7845316 (-)
G121789 NA non-coding upstream 838080 8016064 ~ 8017075 (-)
AMCG00002167 NA other downstream 1149704 5975725 ~ 6015393 (-)
G120993 NA other downstream 2945220 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 3378553 3784236 ~ 3786544 (-)
G120907 NA other downstream 3448845 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 3698636 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 648657 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 2430766 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 2579441 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 2652535 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 2658934 9836918 ~ 9853075 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_06320386_06342648 CLCN6 coding CI01000050 null 6319698 ~ 6342648 (-)