AMCG00002212


Basic Information

Item Value
gene id AMCG00002212
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7210266 ~ 7212964 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002212
ATGACGTCACACTTTTCACGGAAGCAGGAAGATGTGCCTAGAGCCGTTATATGCAGGGTTAACACGATGCCCTTGGTTCCTGCAAACCAACCCCACCTGATTCGGTCCAGTCAGAAAGATGAATATTACCAGACCTGCCTGCGAAACAATGCAAATGAGGCATTTCAGACATTTGCAGGATCTAAGAGGTGGTTGCAATGGAGAAAAGAGACCGAGCTGCTGTCTGATCTTGCCTACTACACCCTGACGACCTTTGCAGGGTACCAGACCCTTGGAGAAGAGTATGTCAATATCATCCAGGTGGACCCCACCAAGCGGAGGATTCCCTCGCGGACGCGCCGGGCTGCCCTCATCCTGTTCCAGGCCTTCCTCCCGTATATCCTGGACAAGGCCATGGTCTGCCTGGAGCACGAGCTGCAGATTGAGGAGACGGGCACTGAGACGGCCCATCCTGCGGCCTCCGGACACTGGAACCCTGCCTCCTCCTTCAGGGAGAGGGTCCGGTGGGCTGCCAGGTCACTGACGGAGGCCCAGAAGAAGACCCTCCTCCACGTCCTCTTTGCCCTCCAGCAGGGTGTGACACTACTGCACAGGCTGCACGTGGCTGTCTTCTACCTCACTGGGGCTTTTTATCACATCGGGAAGAGGGCGGCCGGCATCAGATATCTACACGTACGCAGTCTTCCAGGGGACGACCGTGCTGTCCGCACCAGCTACAAGCTGCTGGGTGCCGTGTCTCTGCTGCAGCTGGCTTTGACTCTGGCCCTGCAGTTTAACAACTTCCGACAGAGACGGAGAGCCAGGCAGGAGTGGAAACAGCACCGAAACCTGCCCTCCTCCAGCACTCAGCCCGTCGAGACCTCGTCTCCCCGTCCGTCCCGCTGCATCCTGTGTCTGGAGGTGCGACGGCATTCGACTGCCACGCCCTGCGGCCACCTGTTCTGCTGGGAGTGCATCACAGAGTGGTGCAACACTAAGGCGGAGTGTCCTTTGTGCCGAGAGAAGTTCCAGCCACACAGACTGGTCTATCTTCGCAACCACAAGTAGAAGAAGAGCAACGATCAATGAAGTTTGGCTTCATATGATTCTACGAGAAATAACTCTGGGAACTGTTATTATATGAGACCTCTGTTAATGAGGTAATCTGTAAAAGACTTTGGGTGCAGGGCATGTATGAGCTGAATCTGTTTGTTTACACTCCCTCTTAACTGCCTGGAGCTTAGCATTCACATCcagatttattataattgttatatattacaaacataGATCACGAATGCCTGTGTTGAGATGTAATACTTATAATGAAGTTAATTTGTGTAAcgtatttaattaataagtgACTTACATGTGGAATTATTAAAACTGG

Function

GO:

id name namespace
GO:0016558 protein import into peroxisome matrix biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13346 PEX10; peroxin-10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002212 True 1369 mRNA 0.52 7 7210266 7212964

Neighbor

gene id symbol gene type direction distance location
AMCG00002210 clcn6 coding downstream 32282 7165097 ~ 7177984 (-)
AMCG00002209 NA coding downstream 101085 7090840 ~ 7109181 (-)
AMCG00002208 mfn2,LOC107748965 coding downstream 123853 7075749 ~ 7086413 (-)
AMCG00002201 prdm16 coding downstream 270721 6923998 ~ 6939545 (-)
AMCG00002200 NA coding downstream 385567 6797887 ~ 6824699 (-)
AMCG00002219 ski coding upstream 352435 7565399 ~ 7582098 (-)
AMCG00002218 ski,LOC106572818 coding upstream 433691 7646655 ~ 7647629 (-)
AMCG00002221 prkcz,LOC106572815 coding upstream 478996 7691960 ~ 7719401 (-)
AMCG00002220 prkcz coding upstream 583759 7796723 ~ 7800503 (-)
AMCG00002222 NA coding upstream 607548 7820512 ~ 7826557 (-)
G121447 NA non-coding downstream 785968 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 796992 6413013 ~ 6413274 (-)
G121444 NA non-coding downstream 802351 6407705 ~ 6407915 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding downstream 824347 6382433 ~ 6385919 (-)
G121403 NA non-coding downstream 932364 6277468 ~ 6277902 (-)
G121689 NA non-coding upstream 348113 7561077 ~ 7562747 (-)
G121716 NA non-coding upstream 444868 7657832 ~ 7658851 (-)
G121718 NA non-coding upstream 450022 7662986 ~ 7663677 (-)
G121754 NA non-coding upstream 617229 7830193 ~ 7845316 (-)
G121789 NA non-coding upstream 803100 8016064 ~ 8017075 (-)
AMCG00002167 NA other downstream 1194873 5975725 ~ 6015393 (-)
G120993 NA other downstream 2990389 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 3423722 3784236 ~ 3786544 (-)
G120907 NA other downstream 3494014 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 3743805 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 613677 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 2395786 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 2544461 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 2617555 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 2623954 9836918 ~ 9853075 (-)

Expression


Co-expression Network