AMCG00002214 (plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766)


Basic Information

Item Value
gene id AMCG00002214
gene name plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7318975 ~ 7323901 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002214
atggatggatggacaggCAGAGCATCTGTTAacgtcctcttctctctctctctctttccctgccCTCTAACAGTGGAGCGATGTATGAGCGCCATGCAGACGGGCACTCAGATGGTGAAGCTGCGCGGGAGCTCCAAGGGACTTGTCCGCTTCTACTACCTGGATGAACACAAGTCCTGCATCCGCTGGCGGCCCTCCAGGAAGAACGAGAGAGCCAAAATTTCTATAGATTCCATCCGCGAGGTGTGTGAAGGGAAGCAGTCTGAAATCTTTCAGCGTTATGCAGACGGAAGCTTTGATCCAAACTGCTGTTTCAGTATTTACTATGGGGACCACATGGAGTCTCTTGACCTGGTGTCTACAAATGCAGAGGAGGCAAGGACCTGGATTACTGGCCTCAAGTACCTCGTGGCTGGCATCAGTGACGAGGACAGCCTTGCCAAGAGACAGCGGACCCGTGACCAATATCCTTTCTGTCACTGCACATCCTAA

Function

symbol description
plch2 Enables phosphatidylinositol phospholipase C activity. Involved in phosphatidylinositol-mediated signaling. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002214 True 492 mRNA 0.52 2 7318975 7323901

Neighbor

gene id symbol gene type direction distance location
AMCG00002211 mthfr coding upstream 127860 7178439 ~ 7191115 (+)
AMCG00002206 NA coding upstream 152148 7159632 ~ 7166827 (+)
AMCG00002205 NA coding upstream 161126 7156487 ~ 7157849 (+)
AMCG00002207 NA coding upstream 165654 7152473 ~ 7153321 (+)
AMCG00002204 NA coding upstream 168562 7145725 ~ 7150413 (+)
AMCG00002213 plch2,LOC107602463 coding downstream 2089 7325990 ~ 7378440 (+)
AMCG00002216 NA coding downstream 58637 7382538 ~ 7390651 (+)
AMCG00002217 NA coding downstream 334357 7658258 ~ 7663689 (+)
AMCG00002224 NA coding downstream 603689 7927590 ~ 7937933 (+)
AMCG00002232 NA coding downstream 656403 7980304 ~ 8010540 (+)
G121526 NA non-coding upstream 520932 6792976 ~ 6798043 (+)
G121417 NA non-coding upstream 991494 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 1041075 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 1748728 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 2043052 5243709 ~ 5275923 (+)
G121680 NA non-coding downstream 237165 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 322817 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 505906 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 586657 7910558 ~ 7917243 (+)
G121767 NA non-coding downstream 621464 7945365 ~ 7953624 (+)
AMCG00002190 acot7 other upstream 716367 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 2092319 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 3776798 3533814 ~ 3542177 (+)
G120742 NA other upstream 4359500 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 4464848 2852154 ~ 2854127 (+)
AMCG00002215 NA other downstream 69899 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 1414870 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 2520304 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 3244011 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 3390898 10714799 ~ 10753893 (+)

Expression


Co-expression Network