AMCG00002216


Basic Information

Item Value
gene id AMCG00002216
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7382538 ~ 7390651 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002216
ACTTGCAGGTTTGGACAAATCAAGATGAGGGGGGTTCCTGGACTCTTTCTTTGCGCCACTGTCCTACTCGTGGCAGAGTTCTGCATTGCAGGCTCTGCTGAAAAAGAGgATAGTGCTAGAATGAAAAGACAGGTCACAGACCTGACAGTCACCACTATAATCCAAGAACCATACACAATGCCAAAAGGCTCAGAGCTGGAAGGCTACTGTGTAGACCTACTGAAGATACTCGCCAACAAGCTGGGCTTCACGTACAACTTAAAGTTGGTGAAGGATGGTACTTATGGAAGACAAGACCCAGATGGCAAATGGAGTGGCATGGTTGGAGAGGTGGTGAGATCGGAGGCTGATTTAGCCGTGGCTCCTCTGACCATCATCGCCACCCGTGAGAAGGCCATCGAAATGACCAAACCCTTCATGCAGACGGGCATTGGGATCATTCTGCGCAAGGAAATCGTCTCCGCAGAGGCCAGCTTCTTTGAGTTCCTCCAGCCCTTCGCCAAGGAAACCTGGATTGGAATATTAATTGCTTACTTGGTGACCTCTTTCTGCATCTGCATGGCCGCCAGGCTCAGCCCGTGTGAATGGAGCGAACCGCAGAGCGAAGACAACCGCTTCACGCTCCTCCACAGCCTCTGGTATTCTGCCGGAGCCCTGACCCTGCAAGGTGCGGGCCCTCAGCCCAAAGCCCTGTCTGTGCGGGTTATCAGCGCCATCTGGTGGTTGTTTGCAGTAGTGCTCCTGGCCTCTTACTTTGCTGGCTTAAGCGCCATGCAGGGCTCGGACAATACCCAGCTCTCCATTGAGACCTTCGAGGACCTGGCAAACCAGGACGTCATCGAGTACGGCACACTGCGCGTCTCGTCCACCTTCGCCTTCTTTAAGTACTCGAAGAACTCAGTCTACCGCCGGATCTATGAGCACATGGAGAGGAAGCAGAGTTTTGTGGCCTCAATGGAAGAAGGTATACGCAGGGCGCAAGAGGGCAATTATGCTTTTATTGCCGAGTCCGTTTCCCTAGACCTGGCTGTGGCCCGATACTGCAATCTCATGAGGGTCCCGGAGGTGATCGGGATGAGGGGTTATGGCATCGCGGCTCATTTAGGTTCTCCCCTGATAAAGAACCTGAGTGTGGCCATCCTGCAGATGAGTGAATCGGGGGATCTGGACTACCTATACAGAAAGTGGTGGGAAACAACCTGCCGGGGGGAAGAGGGGAAGTCGTCCTCTCTCAAGCCCCACAGCCTGGGGGGGATCTTCCTGATTCTGGCCGTGGGGCTGGCCGTGGGGGTGCTGCTGGCCTTGCTGGAGCTGGCTTTCAAATCCAAGATCAATGCAGAGGAGCAGAGGAAAGCATGCTGTTCGGTTTTCTCTGAAGAGCTGAGTCAGCGTGTCCGGAGTAGCAATGTGAAGAAAACACAGGAAAcctcagagaaaaacaaagtataaaGCACTCCAGGATGGCATTGAAATGGCTGTTTATTTTGGTGATACCACAGTTAACGTCCGTTAGGCAAAATAACTAACCCTGATTGCAATAGTTTCTGTCAGTTATTACTCTCTAGTTGCCGTCAATCTCTTATAGAGGCACGGTGTCTTTCATCAACTGTCACATATTCCTACTGATTTAGTTAATGATGTTTCTGCTGTAAATctagattaaacaaatatatgtggGTTCTTAGATTAAGTGAATCATATAATACACCTTCTAACCCCTCAGCTGAGAAGACCCTTCTGGGTGCAGCTCTGTATTTTTTAGCCACACATGGTTTTGATGCATCACTTTCTTAGTGGAAAAATGGTTGAGATGTGCTTTGTTTTAAGCAGTAAAACCCATCAATCTGATATTAATAGAGATTACAGCTGGAGGAGAAACACTGGGAGTTGAGTCTGAATTCCCACAGTACTTGGAAGAGCTGCGGTGTTCAGGAATAGCCAAAAAACGTCTATTTTTTGTTATGGAAAATGAGTGCAAAATGTATGTTAACAGAAAGACTGATGTACTGAGTACTGATCGAGTCAGAGGAACCTATTGCATTTACACAGGGCGACTAACTTCTATAAAATGTTGCGGGGGAAATGAAAGAGGTGATGAGAGAGGGGAGATGAAATTCTGCACTGGAAATATACTGTTGTTGAACTCACACATTCAAGTCATGAAAATATCCTAGACGGTACTCTTTAAGGTCTCATATTGCTGTGCTGTTCACtttcaaatttcaattttatatCAGTGTTTAACCAGCAAATGGCAAATCTACCATTAAGAGCTTGTTTAAAGGAATGTTCTCATTGTCTGTCCTCAGCTCCCTTCCGCACTTCAATCCCTCTACACCTGACTTCTGACTTCTCAAATCCTGGCCTGCTGTTCAGTCTGCTCAAACTGCCAGGAAGCATGCAGAGTTGGTTTTTCACAGGAGGGTTTAAGgatgaaaagaataaaaaatagaaCACTGAAAGCTGACTCTtaattgaacaattattttaaaattgttctGACTTACTGCTCCTgaagtaatgtgttttttgttatttttttgcattacatAATATTGGCAACGAAGTGTCTGgtggaagaggaaaaaatatcCCTAgaaacataacactttttttgtaaCATATTTCAGCATAAGTGTGACTTTTAAGAGATTTAGTATAACATAGGGCAGGTAAAggtattttcatttgtgtctgaTAATTTCCTCATAGacatctgttttaatttaaaaagaaaatagcatCTTCAATGTTGTTATACTAAGTACGTAGGACTTAAATCAGCACGTATCAGAAAAAGTCTGGCTAAACCTAAGAATGTGCAGAGTTGTGATTGGTGTGAAATGTATCCTCAGGCATTATCTTTTTGGttagatttaacattttgtctttgtgtttttaatcatcAGCCAGAGACCAATGGGAAGCTAGAGTGTGTTTTCTTTGGGCTTTTGTCAGTATTGGGCTGAGCAAATGCACATACATAAAGCAATGTCCATGAAGTtaatcaaacacaaaatcaaaatatacatgCAGGTAAATGACAAACGTGTTGAGAATTATGCTTTTGAGGCCCGTTCTTCTTTTTCAGGATTTGTTTGATTTGGACGCCCTTTTCCCCATCCGAACATACATGCTGGGTTTAAGAACTCTGCTGTCAATCCATCTTGGGGgacaaatacattcataatcaaAAGTAATctgttttgggggttttgtCCATatgtgaaaatggaaatgtttttaatgaaagacttatgattttgaaatgttaacCTAGTTTTAACATATCAAGTTACCAATATCATGAATTATTCTGTGCCATTACCTTTACATGCTACGATATAACAATTAAGCTATATACCTGTCACTCGTAGCCAGGAGTTTGAAAAGAAGCCGTAATTTAACTGCTTAATTTAATAAGCTATTTTAAGATGTCAGATCATTGTACCATGTGCATGTTCCCTTGATTTTCTatggtttctttgcttttgcttttgtacaattaataaataaaaccaaatactAACCAACGTTCAGATTTCTGCTCATTGATGcgagtttattttctttttacatgaATGCAGATCATAACAAACCACCCGTGCTAAGCCATAATTGGAAATTAATCAAACAAccaatacttttttgtttgtataaaagaAAGTCTAATTGGAAGCATCATCTC

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002216 True 3688 mRNA 0.43 10 7382538 7390651

Neighbor

gene id symbol gene type direction distance location
AMCG00002213 plch2,LOC107602463 coding upstream 4098 7325990 ~ 7378440 (+)
AMCG00002214 plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766 coding upstream 58637 7318975 ~ 7323901 (+)
AMCG00002211 mthfr coding upstream 191423 7178439 ~ 7191115 (+)
AMCG00002206 NA coding upstream 215711 7159632 ~ 7166827 (+)
AMCG00002205 NA coding upstream 224689 7156487 ~ 7157849 (+)
AMCG00002217 NA coding downstream 267607 7658258 ~ 7663689 (+)
AMCG00002224 NA coding downstream 536939 7927590 ~ 7937933 (+)
AMCG00002232 NA coding downstream 589653 7980304 ~ 8010540 (+)
AMCG00002231 NA coding downstream 626242 8016893 ~ 8022378 (+)
AMCG00002236 NA coding downstream 737546 8128197 ~ 8151854 (+)
G121526 NA non-coding upstream 584495 6792976 ~ 6798043 (+)
G121417 NA non-coding upstream 1055057 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 1104638 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 1812291 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 2106615 5243709 ~ 5275923 (+)
G121680 NA non-coding downstream 170415 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 256067 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 439156 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 519907 7910558 ~ 7917243 (+)
G121767 NA non-coding downstream 554714 7945365 ~ 7953624 (+)
AMCG00002190 acot7 other upstream 779930 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 2155882 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 3840361 3533814 ~ 3542177 (+)
G120742 NA other upstream 4423063 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 4528411 2852154 ~ 2854127 (+)
AMCG00002215 NA other downstream 3149 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 1348120 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 2453554 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 3177261 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 3324148 10714799 ~ 10753893 (+)

Expression


Co-expression Network