AMCG00002217


Basic Information

Item Value
gene id AMCG00002217
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7658258 ~ 7663689 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002217
CTTCACTACTGTAGCATAAGGTCGCTGTGGCGCAGATGTCAGCAGCGctgcgcggctccgccaatgggatcgctgggatctgcagatctgcgctacacgaccGCGACCAATCCGATTGAATATTATGCATCCATTTCCGCTTTGTCATTCCGCAGCGCCAAAATCAAGTGTGTACTATATTGTTCAGTGACAGTGGGCAGGAATAGCTCATGCTTGATCCAAGACAGATACACGCAATAACTAATCGGTTTACATCGTTAATTATGTTGCTGAAGAGATGTTCGTCGTATTTGCAGAGtcacaacaaaagaaaacagctaCCTTCCTGGCAGTAAGTTCGCTCATTCTGCATGAATGCTTGCCTGGCTGGTTCTGTCCACTTCAGATAACCACTGCGAACATGTCCCAGGAAAAGCCCGCGAagttgaaactgaaaagaaagaaacactatTTTCAAGTTGCAAAAGATGGCCGAGACCCCGGCGGCGGTGACACGGGCGCCCCGGGAGAGAGCAGCGCGCCGGGCAGACCGAGCTGTCGCGATACCGGGGAGGGCGGCCCGGCAGCCGCGTCGGGGAATCATTTCAGCACCCGTACCGATCTGTGGTGGGAGAAAGATGACCTCGGCGAGACAGAGAAGTTATGGGCTTTCCTACTGAAGTCTGCATTCCCAGACCTGAGACGGGAAGGGTGGGAAACCGTGCCCGACTTCCCGTCGTCTGTGCCTCAGAGATATCCCAAAGAGCAGCGCTCGAAATGGAAGACCTGCGAGAGACTTAGTGAAGAATGCAGTGCATTCCCCTCAGTTCCTCAACCAGATGCCCGAACAGACGTGGATGCTGACCCCTGCGCCAAGCCTGTAGAACAAGTCCAAGCTTcagtggaggaggagatggTTGTTCAACATGGCAGTCATCAGCTTAACAGGAGTCGAGAGAAGCATGCTAAAGAACCGCCATCCACCTTAGAGGGAACAGCTCTGAGAAATAACGAGACTTGCAAAAGCAATCACAGAAATGAAACGGGGCAGCAGCACCTACATAAACCCTCACCATCATCAAGGCCGACAGGAGGGAGACCGCAGAGCGCATCGACTGACAGGGCTCGGGCGGCTACTGAGGCAGGGGCTCAGCGCCGACGTGAGGAGAATAGCACTGCAGGGCCTTGCTTGTTAGAGAAAGCCCAAAATGGGGAAGTGAAGGAAGATTTGATCAAAAGGAAGCTACCTGCGCACGGGGAGAGAGATTTTGACAGCTGTATTATGACAGAGGAGACTGCTCTGGCAAAATGCCCCACGGAAGAGGGTTGTTACAAGGCGGCTCAATGTAAGAAGGATAATGCCTCTAATAATGGAAGCGCTGATGGGAATTCAGGTGGAGGTGCAATCATACAGAGCTGCCCCATGTGCCTTGTACCGTTTCCTGCTGGGTAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002217 True 1432 mRNA 0.53 3 7658258 7663689

Neighbor

gene id symbol gene type direction distance location
AMCG00002216 NA coding upstream 267607 7382538 ~ 7390651 (+)
AMCG00002213 plch2,LOC107602463 coding upstream 279818 7325990 ~ 7378440 (+)
AMCG00002214 plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766 coding upstream 334357 7318975 ~ 7323901 (+)
AMCG00002211 mthfr coding upstream 467143 7178439 ~ 7191115 (+)
AMCG00002206 NA coding upstream 491431 7159632 ~ 7166827 (+)
AMCG00002224 NA coding downstream 263901 7927590 ~ 7937933 (+)
AMCG00002232 NA coding downstream 316615 7980304 ~ 8010540 (+)
AMCG00002231 NA coding downstream 353204 8016893 ~ 8022378 (+)
AMCG00002236 NA coding downstream 464508 8128197 ~ 8151854 (+)
AMCG00002235 NA coding downstream 497637 8161326 ~ 8178947 (+)
G121688 ski,LOC106572818 non-coding upstream 9942 7646718 ~ 7648316 (+)
G121680 NA non-coding upstream 95526 7561066 ~ 7562732 (+)
G121526 NA non-coding upstream 860215 6792976 ~ 6798043 (+)
G121417 NA non-coding upstream 1330777 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 1380358 6277518 ~ 6277900 (+)
G121722 NA non-coding downstream 166118 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 246869 7910558 ~ 7917243 (+)
G121767 NA non-coding downstream 281676 7945365 ~ 7953624 (+)
G121862 NA non-coding downstream 1152641 8816330 ~ 8816553 (+)
G121981 NA non-coding downstream 1584628 9248317 ~ 9313334 (+)
AMCG00002215 NA other upstream 247028 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 1055650 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 2431602 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 4116081 3533814 ~ 3542177 (+)
G120742 NA other upstream 4698783 2956908 ~ 2959475 (+)
AMCG00002245 NA other downstream 1075082 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 2180516 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 2904223 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 3051110 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 3693863 11357552 ~ 11359840 (+)

Expression


Co-expression Network