AMCG00002219 (ski)


Basic Information

Item Value
gene id AMCG00002219
gene name ski
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7565399 ~ 7582098 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002219
ATGCCCGCACATGTGCACAGTGCCCTGCTGAGGCGCCCAATCCTGCCTGCTGGTGTTCCAGTGCCCCATCTGCTTCCATTACTTAACTTCTATCATGAAACGCTAATTCTTGCAGTTTGCGCCAGGCCCAGTGGCCCCGCAGAGTCTGCCTGGCCCTCTTCCAGGtcCTCAGATCCGATTCCAGCCAAGAAGTCCAAACATGAAGATTCTGTCCCTCAGTCACCAGCAGCTGACAAAGAGAAGCAACCTGATTGGCTACGATCCCTCTCCTCTTCTGCAAATAAGGGTCTAAACTGCATTCATCCCAGGCAGCGACCTTCAGCCTTCCGCCCCTGGTCCCCCACCATTTCATCCAGTGAGAAGGAGACCTCCACGCATCTGCCCGCTGTTCTCCGAGAAAGCTTTTACAACTGCAAAAGTATAGAAACCTCAGTGGCACCCAATGTGGCCCTGACGCCATTGCCTCATCAGAAAGTGGGGCAGCATTCCCCGTCCGTACCCAGTGCCTCCCATGCCAATGGCAGTGATGATAGTGGAAGCAGCAGGCCAAGGAAAAGAAGGCTGACAGGCGAGGCGCACCCAGCACCAGAAACTCTCTGTCCCCCCGTCCCGGCAAGCACAGCAACCCAGGAAGACAAGGACTCCGAGGGAGAGATCGAGGTGGAGAGTCGGGAGGAATTCACGTCCTCTCTGTCGTCCCTGTCGTCCCCTTCCTTCACCTCTTCGAGTTCGGCCAAGGACCTGAGTTCCCCGGGGACCCAGGTGACCGCCTCCACAGTGTCAGCGGCCTTCGAGGGCCCGGCCCCGCTCAGCGAGGCCCACTGCTCGGGGCTGGAATCAGAGCTGGAGTCTCTGAGGCAAGCCTTGGACAGTGGCCTGGATTCCAAGGAGGCCAAGGAGAAGTTCTTGCACGAGATCGTCAAGATGAGGGTGAAGCAAGAGGAAAAACTGGGCTCCGCGTTGCAGGCCAAGCGCAGCCTCCAGCAGgagCTAGAGTTTCTGCGGGTGGCCAAGAAGGAGAAGCTGAGAGAAGCGACCGAAGCCAAACGCAACCTGAGGAAAGAGATCGAGCGGCTGCGCGCGGAGAATGAGAAGAAAATGAAGGAGGCGAACGAGTCGAGGATACGGCTGAAGagagagctggagcaggccagGCAGCTGCGAGTGTGTGACAAGGGCTGCGAGGCCGGCAGACTGAGGGCCAAATACTCAGCACAGATTGAAGACCTGCAGCTGAAGTTGCAGCATGCAGAGGCTGACAGAGAGCAACTGCGCGCCGATTTACTTCATGAGCGAGAAGCCAGGGAGCATTTGGAGAAAGTGGTCAAGGAGCTGCAAGAACAACTGTGGCCCAAAGCCGGCAGCAACAACATGGCAACCAAGGACtctgaaaactaa

Function

symbol description
ski Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; enzyme binding activity; and zinc ion binding activity. Involved in several processes, including SMAD protein signal transduction; negative regulation of osteoblast differentiation; and negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Acts upstream of or within negative regulation of Schwann cell proliferation. Located in PML body and centrosome. Part of protein-containing complex.

NR:

description
PREDICTED: ski oncogene

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0051216 cartilage development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046332 SMAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002219 True 1398 mRNA 0.57 8 7565399 7582098

Neighbor

gene id symbol gene type direction distance location
AMCG00002212 NA coding downstream 352435 7210266 ~ 7212964 (-)
AMCG00002210 clcn6 coding downstream 387415 7165097 ~ 7177984 (-)
AMCG00002209 NA coding downstream 456218 7090840 ~ 7109181 (-)
AMCG00002208 mfn2,LOC107748965 coding downstream 478986 7075749 ~ 7086413 (-)
AMCG00002201 prdm16 coding downstream 625854 6923998 ~ 6939545 (-)
AMCG00002218 ski,LOC106572818 coding upstream 64557 7646655 ~ 7647629 (-)
AMCG00002221 prkcz,LOC106572815 coding upstream 109862 7691960 ~ 7719401 (-)
AMCG00002220 prkcz coding upstream 214625 7796723 ~ 7800503 (-)
AMCG00002222 NA coding upstream 238414 7820512 ~ 7826557 (-)
AMCG00002225 NA coding upstream 264240 7846338 ~ 7856519 (-)
G121689 NA non-coding downstream 2652 7561077 ~ 7562747 (-)
G121447 NA non-coding downstream 1141101 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 1152125 6413013 ~ 6413274 (-)
G121444 NA non-coding downstream 1157484 6407705 ~ 6407915 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding downstream 1179480 6382433 ~ 6385919 (-)
G121716 NA non-coding upstream 75734 7657832 ~ 7658851 (-)
G121718 NA non-coding upstream 80888 7662986 ~ 7663677 (-)
G121754 NA non-coding upstream 248095 7830193 ~ 7845316 (-)
G121789 NA non-coding upstream 433966 8016064 ~ 8017075 (-)
G121875 NA non-coding upstream 1243333 8825431 ~ 8859003 (-)
AMCG00002167 NA other downstream 1550006 5975725 ~ 6015393 (-)
G120993 NA other downstream 3345522 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 3778855 3784236 ~ 3786544 (-)
G120907 NA other downstream 3849147 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 4098938 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 244543 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 2026652 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 2175327 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 2248421 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 2254820 9836918 ~ 9853075 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_04165584_04232583 SKIA, SKI coding CI01000010 null 4165584 ~ 4232583 (+)