AMCG00002220 (prkcz)


Basic Information

Item Value
gene id AMCG00002220
gene name prkcz
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7796723 ~ 7800503 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002220
AGACATGCTCATCACGGACCTGGACGCTACCATGACATACACTGGGCTGTGCAATGAAGTCCGAGACATGTGCCGCCTGCATCAGCAGCCCATCACTCTCAAATGGATTGACGATGAAGGTGATCCATGCACCATATCCTCCCAGATGGAGTTGGAAGAAGCTTTTCGTTTGTACAGCCGGAACAGAAACGAAGGGCTGCTTATCCATGCATTCCAGAGAAACCAGGCATGCCCTGTCCGGGAGAAG

Function

symbol description
prkcz Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including animal organ development; photoreceptor cell outer segment organization; and regulation of cell migration involved in sprouting angiogenesis. Is expressed in nervous system and neuroepithelial cell. Orthologous to human PRKCZ (protein kinase C zeta).

NR:

description
PREDICTED: protein kinase C zeta type isoform X1

GO:

id name namespace
GO:0007097 nuclear migration biological_process
GO:0016310 phosphorylation biological_process
GO:0048699 generation of neurons biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002220 True 247 mRNA 0.52 3 7796723 7800503

Neighbor

gene id symbol gene type direction distance location
AMCG00002221 prkcz,LOC106572815 coding downstream 77322 7691960 ~ 7719401 (-)
AMCG00002218 ski,LOC106572818 coding downstream 149094 7646655 ~ 7647629 (-)
AMCG00002219 ski coding downstream 214625 7565399 ~ 7582098 (-)
AMCG00002212 NA coding downstream 583759 7210266 ~ 7212964 (-)
AMCG00002210 clcn6 coding downstream 618739 7165097 ~ 7177984 (-)
AMCG00002222 NA coding upstream 20009 7820512 ~ 7826557 (-)
AMCG00002225 NA coding upstream 45835 7846338 ~ 7856519 (-)
AMCG00002230 NA coding upstream 70391 7870894 ~ 7871496 (-)
AMCG00002228 NA coding upstream 87809 7888312 ~ 7901666 (-)
AMCG00002229 NA coding upstream 106532 7907035 ~ 7907578 (-)
G121718 NA non-coding downstream 133046 7662986 ~ 7663677 (-)
G121716 NA non-coding downstream 137872 7657832 ~ 7658851 (-)
G121689 NA non-coding downstream 233976 7561077 ~ 7562747 (-)
G121447 NA non-coding downstream 1372425 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 1383449 6413013 ~ 6413274 (-)
G121754 NA non-coding upstream 29690 7830193 ~ 7845316 (-)
G121789 NA non-coding upstream 215561 8016064 ~ 8017075 (-)
G121875 NA non-coding upstream 1024928 8825431 ~ 8859003 (-)
G121885 NA non-coding upstream 1068142 8868645 ~ 8870698 (-)
G121912 NA non-coding upstream 1131660 8932163 ~ 8933163 (-)
AMCG00002167 NA other downstream 1781330 5975725 ~ 6015393 (-)
G120993 NA other downstream 3576846 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 4010179 3784236 ~ 3786544 (-)
G120907 NA other downstream 4080471 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 4330262 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 26138 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 1808247 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 1956922 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 2030016 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 2036415 9836918 ~ 9853075 (-)

Expression


Co-expression Network