Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00002221 |
| gene name | prkcz,LOC106572815 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 7691960 ~ 7719401 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| prkcz | Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including animal organ development; photoreceptor cell outer segment organization; and regulation of cell migration involved in sprouting angiogenesis. Is expressed in nervous system and neuroepithelial cell. Orthologous to human PRKCZ (protein kinase C zeta). |
| description |
|---|
| PREDICTED: protein kinase C zeta type isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00002221 | True | 1302 | mRNA | 0.48 | 12 | 7691960 | 7719401 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00002218 | ski,LOC106572818 | coding | downstream | 44331 | 7646655 ~ 7647629 (-) |
| AMCG00002219 | ski | coding | downstream | 109862 | 7565399 ~ 7582098 (-) |
| AMCG00002212 | NA | coding | downstream | 478996 | 7210266 ~ 7212964 (-) |
| AMCG00002210 | clcn6 | coding | downstream | 513976 | 7165097 ~ 7177984 (-) |
| AMCG00002209 | NA | coding | downstream | 582779 | 7090840 ~ 7109181 (-) |
| AMCG00002220 | prkcz | coding | upstream | 77322 | 7796723 ~ 7800503 (-) |
| AMCG00002222 | NA | coding | upstream | 101111 | 7820512 ~ 7826557 (-) |
| AMCG00002225 | NA | coding | upstream | 126937 | 7846338 ~ 7856519 (-) |
| AMCG00002230 | NA | coding | upstream | 151493 | 7870894 ~ 7871496 (-) |
| AMCG00002228 | NA | coding | upstream | 168911 | 7888312 ~ 7901666 (-) |
| G121718 | NA | non-coding | downstream | 28283 | 7662986 ~ 7663677 (-) |
| G121716 | NA | non-coding | downstream | 33109 | 7657832 ~ 7658851 (-) |
| G121689 | NA | non-coding | downstream | 129213 | 7561077 ~ 7562747 (-) |
| G121447 | NA | non-coding | downstream | 1267662 | 6420041 ~ 6424298 (-) |
| G121445 | chd5,LOC107737210,LOC107691315 | non-coding | downstream | 1278686 | 6413013 ~ 6413274 (-) |
| G121754 | NA | non-coding | upstream | 110792 | 7830193 ~ 7845316 (-) |
| G121789 | NA | non-coding | upstream | 296663 | 8016064 ~ 8017075 (-) |
| G121875 | NA | non-coding | upstream | 1106030 | 8825431 ~ 8859003 (-) |
| G121885 | NA | non-coding | upstream | 1149244 | 8868645 ~ 8870698 (-) |
| G121912 | NA | non-coding | upstream | 1212762 | 8932163 ~ 8933163 (-) |
| AMCG00002167 | NA | other | downstream | 1676567 | 5975725 ~ 6015393 (-) |
| G120993 | NA | other | downstream | 3472083 | 4214715 ~ 4219877 (-) |
| G120927 | slc45a1,LOC107756616,LOC106565711,LOC107702000 | other | downstream | 3905416 | 3784236 ~ 3786544 (-) |
| G120907 | NA | other | downstream | 3975708 | 3713867 ~ 3716252 (-) |
| AMCG00002097 | NA | other | downstream | 4225499 | 3407485 ~ 3466461 (-) |
| AMCG00002223 | NA | other | upstream | 107240 | 7826641 ~ 7839411 (-) |
| AMCG00002265 | NA | other | upstream | 1889349 | 9608750 ~ 9620127 (-) |
| AMCG00002275 | ube4b,LOC107681967,LOC107570768 | other | upstream | 2038024 | 9757425 ~ 9801108 (-) |
| AMCG00002276 | NA | other | upstream | 2111118 | 9830519 ~ 9833224 (-) |
| AMCG00002279 | NA | other | upstream | 2117517 | 9836918 ~ 9853075 (-) |
