AMCG00002222


Basic Information

Item Value
gene id AMCG00002222
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7820512 ~ 7826557 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002222
ATGGCCTGTAGACCCACGAGGAAGAGGTGCGACAGAGAGCGCCCCGGAGCGACAGAACGAGGAGCTGCATACGGGGGAAGTGAGAGTGACGGCAGGGAGGAGCTGTGGGTGGCGATCAGGGCAGTGGAAGAGGAACTGGGAGACGTGCTGGGGGACGTGTTGGCATCCATAGCTGTTGTGTTTCTGGCCGCCTCTGCTGTGGAGGAGTGCGGCCCCAGCGCATACAGTGTCAATGGCCAGTGCTGTGGGACGTGTGGGGCAGGCAGCTATGTGTCCCAGCACTGCACCCCACAGAATCATACCCAGTGTACCAGCTGTGCCAACGGCAGTTATATAGACCGGCCTAATGGGTTGCCCCAGTGCATTGCCTGTACAGTCTGTGACACAGAGTTGGGACTTTTTGAGAAACAGTCATGCACCGCTGTGAGTAACACTGTCTGCCAGTGTGTGGAACAGTTCTACTGCATGGATGGAGACTGGGAAAACTGCCATCTGTGCCGGAAACGACACGTCTGTGCACCAGGACAGTGGGTCAAACACAACGGAACAAATATATCTGACACCATATGTGAAGACTGTCCTTCTGGCACCTTTTCAAAAGAGGAAATGTCACAATCTTGTGCACCTTGGACTGTGTGTACATCTGGCCACAAGGCTAATGGGAGTTCAGTCATGGATGTAGAATGTCATGCCATCTCAAGAACACATATAGTACTGTTTATAGTGTTCCTTGCTCTTCTGCGATTGGACGGCAGGTGTGCCTGCAGCGTACGGATTGGCTGTGGCGCTGGCATTCTCCGCCATGTTAGCCAAATCCTCCCGGGAGACGGCGACTCGGGCGGCGCGGAGAAACTTCTGGAGTGA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002222 True 864 mRNA 0.55 7 7820512 7826557

Neighbor

gene id symbol gene type direction distance location
AMCG00002220 prkcz coding downstream 20009 7796723 ~ 7800503 (-)
AMCG00002221 prkcz,LOC106572815 coding downstream 101111 7691960 ~ 7719401 (-)
AMCG00002218 ski,LOC106572818 coding downstream 172883 7646655 ~ 7647629 (-)
AMCG00002219 ski coding downstream 238414 7565399 ~ 7582098 (-)
AMCG00002212 NA coding downstream 607548 7210266 ~ 7212964 (-)
AMCG00002225 NA coding upstream 19781 7846338 ~ 7856519 (-)
AMCG00002230 NA coding upstream 44337 7870894 ~ 7871496 (-)
AMCG00002228 NA coding upstream 61755 7888312 ~ 7901666 (-)
AMCG00002229 NA coding upstream 80478 7907035 ~ 7907578 (-)
AMCG00002227 mad2l2 coding upstream 111903 7938460 ~ 7945017 (-)
G121718 NA non-coding downstream 156835 7662986 ~ 7663677 (-)
G121716 NA non-coding downstream 161661 7657832 ~ 7658851 (-)
G121689 NA non-coding downstream 257765 7561077 ~ 7562747 (-)
G121447 NA non-coding downstream 1396214 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 1407238 6413013 ~ 6413274 (-)
G121754 NA non-coding upstream 3636 7830193 ~ 7845316 (-)
G121789 NA non-coding upstream 189507 8016064 ~ 8017075 (-)
G121875 NA non-coding upstream 998874 8825431 ~ 8859003 (-)
G121885 NA non-coding upstream 1042088 8868645 ~ 8870698 (-)
G121912 NA non-coding upstream 1105606 8932163 ~ 8933163 (-)
AMCG00002167 NA other downstream 1805119 5975725 ~ 6015393 (-)
G120993 NA other downstream 3600635 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 4033968 3784236 ~ 3786544 (-)
G120907 NA other downstream 4104260 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 4354051 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 84 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 1782193 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 1930868 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 2003962 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 2010361 9836918 ~ 9853075 (-)

Expression


Co-expression Network