AMCG00002230


Basic Information

Item Value
gene id AMCG00002230
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7870894 ~ 7871496 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002230
GCAATCGAGTTAATCGTCACTGCACAGACTTCTCCAGCACCTCCTGTATACCGTGTGTTCATGAGACCTTCACTGACCAGCCTAATGGCTTAGATAAATGCCGTCCATGCAGTGTCTGTGATGCAGGACTGGGTTTAGAGACTCTGAGGCGCTGTACATCCTCCTCAGACGCACTGTGTACTTGTGTGAACGGGTATTATTGTGAGGAACCAAATAAGGAGGGCTGTAAACTGTGTCAGAAACACAGCACCTGTAAACCTGGAcagtttataaaacataatg

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05170 Human immunodeficiency virus 1 infection
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002230 True 282 mRNA 0.47 2 7870894 7871496

Neighbor

gene id symbol gene type direction distance location
AMCG00002225 NA coding downstream 14375 7846338 ~ 7856519 (-)
AMCG00002222 NA coding downstream 44337 7820512 ~ 7826557 (-)
AMCG00002220 prkcz coding downstream 70391 7796723 ~ 7800503 (-)
AMCG00002221 prkcz,LOC106572815 coding downstream 151493 7691960 ~ 7719401 (-)
AMCG00002218 ski,LOC106572818 coding downstream 223265 7646655 ~ 7647629 (-)
AMCG00002228 NA coding upstream 16816 7888312 ~ 7901666 (-)
AMCG00002229 NA coding upstream 35539 7907035 ~ 7907578 (-)
AMCG00002227 mad2l2 coding upstream 66964 7938460 ~ 7945017 (-)
AMCG00002226 NA coding upstream 98407 7969903 ~ 7979082 (-)
AMCG00002233 NA coding upstream 141481 8012977 ~ 8014218 (-)
G121754 NA non-coding downstream 25578 7830193 ~ 7845316 (-)
G121718 NA non-coding downstream 207217 7662986 ~ 7663677 (-)
G121716 NA non-coding downstream 212043 7657832 ~ 7658851 (-)
G121689 NA non-coding downstream 308147 7561077 ~ 7562747 (-)
G121447 NA non-coding downstream 1446596 6420041 ~ 6424298 (-)
G121789 NA non-coding upstream 144568 8016064 ~ 8017075 (-)
G121875 NA non-coding upstream 953935 8825431 ~ 8859003 (-)
G121885 NA non-coding upstream 997149 8868645 ~ 8870698 (-)
G121912 NA non-coding upstream 1060667 8932163 ~ 8933163 (-)
G121935 NA non-coding upstream 1146630 9018126 ~ 9018327 (-)
AMCG00002223 NA other downstream 31483 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 1855501 5975725 ~ 6015393 (-)
G120993 NA other downstream 3651017 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 4084350 3784236 ~ 3786544 (-)
G120907 NA other downstream 4154642 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 1737254 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 1885929 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 1959023 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 1965422 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 2398393 10269889 ~ 10279984 (-)

Expression


Co-expression Network