AMCG00002232


Basic Information

Item Value
gene id AMCG00002232
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7980304 ~ 8010540 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002232
atAGGACATGACTGTGTCAAGCACTTACTTTGAATGGATCTAAATGGTGATGCTCTAGTGAAAGCCTATTCCTTGGGTTTGATGTCAGATTTAATGACACTGAAGTACCAGCCAACTGTTGCAGAATGCCACACAAGATAGGGTTTGTAGTGGTCAGCTCCTCTGGACACGAGGATAGCTACAGCGCCAAGGAGTTAATGGTTCACGCCCCTACTGTCAATGGATGGAGATCAGCTAGATTTTGCCTATACCCTCAGGAAATCACCATACAGCTGGTCGAGCGCTGCCGCATCAGAAAGCTCCAGCTGCTGGCTCACCAATACATGATCTCAGCGAAAATCGAGTTCCACATCAGCGACAGTCTGCCAGATTCCTTTTCACCCACTCAGTCCGGTAGCTTCCGCAGGCTAGGGTATGTCTCACTCTCTGACAATGAGAAAACGGGATTTAAAGCTCGGGAGCTGAAGTCTGTTCATGTGGATGCAGTTGGAAGCTACCTGAAGCTGACTTTCCACAAGAACCACGAGAATCGATACAACCTATACAATCAGgttgCATTGGTTGCTATTAATGTTCTTGGAGACCCAGTGGATGGCAAAGAAATGGATATCACTCCAACAAGGGATCAACTGATTGAACAATACCTCAACAGCACTCACAATGACATCTCCCTAGATGGAACTTACTTAAGTAAATCCGATTCCATTTCCCCATTGGATGACCTGGCATTCGATATGTACCAGGACCCCGAAGTGGCTCAGATCATCCGAAATCTGGATGAGAAAAAACAGGACGCTGTCCGTCAGGAGAGATACGACCTGGCCAAGAAGCTGAAGCAGGCTATCGCAGACTTACAAAAGGTAGGGGAGCGCCTGGGCCGTTATGAAGTTGAGAAACGCTGTGCAATCGAAAAGGAGGACTACGACCTGGCCAAGGAGAAGAAACGGCAGATGGATGAATACCGCCTGACAGTTTATCAGCAGATTGAGCTTCACAATTTACTTGATATGGGCCCGATTTGGAAGACAACCGAAATTTCTTTGGAACCTCCCGTTGCCATTTTCCCTCCTCAACAGGAAAAAACACGCGAGACTCCGCCCAGACGAAAAAAGCAAGAGAAGAAGCCAGAAAAGCCCCCTGAGCCTGAACACCCCATCCCCAAACCATCCACCCCACAGCGGACCCCAACACCCCCTCCACCCCGAGCTCCATCAGACGTACCCAAGATCGATATCAGTGCTCTGCCCTATGACGAGAGACCCCTGCCTGCTCTGAGGAAACAGATGGGGGAGCAGCAGAGCCAGCTGGAGGAGCCTCCCCCCCCAGACTCCTCCAGGACCCCCCGGAGCACAGGGATCACTGGGGAGCCAGAGCCACTGACAGAGAAAGCCCTGAGGGAGGCCAGCTTTCCCATAGAGGTGTACGGGGAGGGACTGGTGGCAGGAGCTTACTCGAAGACTTGGTCTTACCGTGAGGATGCGCTGTTGGCTGTGTATAAAAAGCTAATGGAGGCTCCAGCAGGAATGCCTAAAGACGATCTGAAATCCATGGTGCGCGCAGCTGTGTTTCTGGTCAGGAAGGGCCTCGTGGACAAGGTGTCATCAGTGTTTCAAGCCTCTCTGAAGCTGCTGAAGATGATCCTAACCCAGTTTATCCCCAAACACAAGCTGGGTCGAGTGGAGACCAGCCACTGCTTGGAGCGCACCTGGCCAAACCTGATTGCCAGAACTGGAGACCCTGCTACCCGCCTTCGCATTGCGGCAATGCAGTTCGTCCAGGAAATGGCCCTGTTTAAAGAGGTCAAGGCCCTGCAGATGGTGCCCACTGAGCTGGTGAAGACTATGAAGCCCAGCACGCCAAGCCGCCTGGCCCTCAGCCACGTGGAGCTGCTGGAGAAGCTGCTGGAGGATCTTGGCACGGACGGCTCCGGATTCACCCTGGACAATGTCATGCAGTTTGCTACTGGTGCCCTGGAGCACAGTGCCTCGGAGGTGCGTGAAACAGCAGCCAGGATAATCCAGATCCTCTACCGCCAGCATAAGAGCGCTGTTTTGGAATACCTCCCTCCTGACGACGCCAACACTCGCAAGAACATCCTCTACAAAAACATCTTCGAGGGGTTTGCCAAGATTGACGGCCGTCCcactgagacacagaccaaGACTTTGAAGAAGGCTGCCAAGCAGGAGgtggagaaagagaagaaagcgGAGATCCGTGCTCTCCAGAATCAACTGGCCGCCTTGAAGGAGATCTCCACCAGTGACAAGgGGAAGGAGAAGAGTAAGGCGAAGGAGAAGGAAACTCATAAAGCCATTAAAACAGGCATTACAGGTGTTAAGAAACCCCCCCCTGCCCAGTCCCCAGACACAGGGGATGATCAATCTTCAGTGGCAAATTACCTAGACAACCTATGCATATTTTGTGGTGAGAAGGATGACTCTTTCACAGAGGAAGGCCTGGATTTGCATTACTGGAAGCACTGTCCGATGCTGAGACGCTGTGATCACTGCAAGCAGGTAGTCGAGATAGCCAGCCTGATTGAGCACTTGTTGACTGAATGTGACAAAAAAAGCAGCTTTGCCCAGTGTCAGCGCTGCACCGAGGCCCTGCCCAAAGAGGAGCTGTCCGACCACATACGGAGCAAGACCTGCAATCcttCCAAGTCTGAAAAAAAGTCTAACCACTGTCCCTTGTGCCATGAAAATTTTGCACCTGGAGATGAGAATGACATGTCACATCTGATAATGTACTATATCCTGGAAATCTCACCTAATGAGAAAGGAGGGCTGCAAACAGAACGTGCGCAGGACGGCAGCTCTACAAAGGACCCAACAGATACAAGGGAAAATGGGTGGTCCCGCCATTACAAAGCAGCCCTCCACAGGGGCAAAAGGTCGATCCACAGCTATGACGAGCAAGATCCCAGCCCCCAGAGCAGGAGCCCACAAAACCAACAATCGCACACCAGCCAAGCAGTGAATCCGCACTGAACACCGTGGGACGTACCACACTTACTAACGGCTCTTACGACAACTGACACAACGCTGCTGCTGTTTCATTAGGGACACAATGGACTTTTGAGAATGGGTAAGAAGCTCATGCATCGCACCCGATCCATGGGTGGAGTAAACTGCAAACGCTCAAGTTACTACAGACTCAGACAGTTTgccagtttgtgttttgtgtgtgcattgtcACCTTGCTGAGTGCCACCCGTGCTTCtccagtgtctgtgtatttTCGTAGTTTAAGCAGATATtctatatttatacttttttaaatattaaatatgatctGTTACTGTTTGAGAGTGTTCTAATCACtggatatataaatatctaaCTACCATATAATTAACTCTTATCCCTTTTTGTAGCACTAGGTGTTTTGCACTACAGTAGCAATGGTGTTTGAATATGGAGACTTTTTGTGTGGATTGAAAAGTGTGAGGTTCAGTTATACCTTTTCACATGGCAAAATAAAGCTCAAAAGCCTAGTCAGAGGGTGAACTTTGAGCTGAAGTGCTGGGAAATTGTGTAATGGCCTAAGCAAATTGAATTTGTTGATAACAGAGTACTTAGCATTTTGccaaatataaatgtttgccTTTCATTGACTTCCCTTTGGTTTTTCTATATTTCCATTGACCAGTATGTGACACTGTGTGGGGTGGACATGGCATCTGGGCTCTCAGGTGGTGTGTTGAAAAAACAGAGGCACGGGTTATGGggaaataagtttttttttttaacacagtacACATGTGGTCAAACTAATCAGACATACAAAGACCAAAACAAACCTTAGTTCCTTGTTGAGTCTAAACTaaacttaaacacacacacaaataataatactgtaatttataatCCAAGTCAAATTCAAGTTTCAAGTTTGTTACCATGATTAGTTTCAAATGCTGTTCTCTCTCAATCACACTGGGAAGTGGATTCCTTCCCTATTTTATCGACGGGGGAGCAAGTCGCGGACGAACCAGCAGATCAGGTTTTTCCTCTGTACTTTTCCTCCCCTGGTGCAGGGCAGTTCGGGTCACTGTGCCAACCAGCACAGCATCAcagtatttatgtttgtgtgtgtgtatatatatatctaaagcTATCTAATTAAACTTGCATTCAAGTTAACATAAATGTACATAGAGTACACACATCTCCACAAACtgaaagtaaatgaataaaatcaattttgtGCAGTATTAGATGTTTACCAGAGGTTGTAGGAGTTTTTGGGTGTGTAAATGTGGGGTCACCCTTATATGCAGTTACAGAGCACGTTCTAACGGTTTCACtaaaaaacttgaaaatgaaTATGATTTCACTGACTATATGTACTTTTGAGCAATACCGAtaaagggattttattttaaaatagtcacCGACTGGCATAATTCTGTAATGATGGGCACAGCAAGCAGCAGATCTTTGGAAAGCCATTGGTCTCTTCATTCCAGATAGACCTTAACTGAGCTGTTCTGCACCGTCACTCAGACCCTGTGTTCATAAACAAAGTATGGATGGTGTCGTGAATATTTTACATCACAGCTGGCGACAGGGTGTTACTGTCTTCTCTACACACATCACCAGACCAAGGCCAACCAATATGTTTCTACATTTTGTACAAGAAAACACAGTCTCCTCTGACACCATCAGTTCTTGTGTTATGTACCTACATTTCAGCCTCAAACCAGTCtaggagagaaagacagagaagacCTCTGCAGAGGAAATGGCTGCAGGACGCAGGCTGTAGTGATGTACCCTATCAGTGTCCTAGGAGAGGTGATACCAGTGTGACTCACACTGATCATGGTGTTCACAAGAACCCAATAGTTACTTttgagagggagaaaggggggAGGTGTCATTGTTATTGATGGCTACCAGGAaccaggaagaaaataaataaataaataaatatatgtattcatattgatTAACATTAGCAGCCAAAGTTTTAGTACGTAATCAAGGGAGATTTTCCTTATGCAAAAACAAGAGACCTTCAAAGCTTTCCTCGCCCTACTCTGGCATTGTAATTCAAGTCATCAAGAGAACATAGCACTGAACTGCATCTCCAGCTAATTACTGTGTGGCTCTATGCAACAGTGTATCTTCTGCTGAAATAGCAGCATTTCGCCAGAGCAGAAagcattatttaaatctgtttgtCAAGAttgtaaaatagattttatatgtatggatttgatttttttacaGcagtgtatgtttgtttttatttcttacattgttttttatttgtttttcttttttctttatttatgggctcattgctttaatttccttaaaataacatttatttgtttgtttggcaaCAAGATAAGATGCAAAGGGAAGCAATGGGTTTCTAAACTGTAGTGAATACACacatagcacttatacaacacaTGCACTGAGATCAACTCTCAGGTAGAAGAATACTTCAGTTAGAAAATATTCTGTGAGAAGATTAGTAACTTTTTCCATAGTAGTGCACTGTGCTCTCCCtcttgaaatagaaaaataaacttatttCTCGAATTGTATATGGtaaaactttaattttcttcatcattatttttaactgttgaATCCATCCATGAGTTGATGCATACAAATTTTAGGAAATCTGTATATACTTAAAATAGATTGTCTGTCTGGTGGAGTaataattcagtattttttatatttattatacttgCTAAGAATATTGCTACCTTTCCATGAAAAATAATTCCATGAAAGACAGATGTTCTTATAAGATTGTCATTTTCATATCAGTTTGAAATTATTGCCAGAGTTAAGACCAGAAAcggaaaataaatatcaactAGAGtatatgaattaatttgaacaaatgCAACCCAGTGCACTTTTAAATGTGCTACACAATTAAGCTCATGGAAGCAGAAACCTCCCAGAAGAGCTTATGATTGttgtttgaaatgcattctgtattgtgtgtgattttgagtcattgaaaaaatacaaattgtcaaATTACCTCTCCAGCCCACTATTTTGTTGTaaacacagttttgttttattgatctaaaaactgaataaataaagtcttatttttt

Function

GO: NA

KEGG:

id description
K16458 CEP104; centrosomal protein CEP104

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002232 True 6103 mRNA 0.44 24 7980304 8010540

Neighbor

gene id symbol gene type direction distance location
AMCG00002224 NA coding upstream 42371 7927590 ~ 7937933 (+)
AMCG00002217 NA coding upstream 316615 7658258 ~ 7663689 (+)
AMCG00002216 NA coding upstream 589653 7382538 ~ 7390651 (+)
AMCG00002213 plch2,LOC107602463 coding upstream 601864 7325990 ~ 7378440 (+)
AMCG00002214 plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766 coding upstream 656403 7318975 ~ 7323901 (+)
AMCG00002231 NA coding downstream 6353 8016893 ~ 8022378 (+)
AMCG00002236 NA coding downstream 117657 8128197 ~ 8151854 (+)
AMCG00002235 NA coding downstream 150786 8161326 ~ 8178947 (+)
AMCG00002241 NA coding downstream 795576 8806116 ~ 8809795 (+)
AMCG00002246 gnb1,LOC107385217,LOC104919476,LOC100703896,LOC108231344 coding downstream 848893 8859433 ~ 8867964 (+)
G121767 NA non-coding upstream 26680 7945365 ~ 7953624 (+)
G121741 NA non-coding upstream 63061 7910558 ~ 7917243 (+)
G121722 NA non-coding upstream 146093 7829807 ~ 7834211 (+)
G121688 ski,LOC106572818 non-coding upstream 331988 7646718 ~ 7648316 (+)
G121680 NA non-coding upstream 417572 7561066 ~ 7562732 (+)
G121862 NA non-coding downstream 805790 8816330 ~ 8816553 (+)
G121981 NA non-coding downstream 1237777 9248317 ~ 9313334 (+)
G121999 NA non-coding downstream 1532075 9542615 ~ 9562591 (+)
G122058 NA non-coding downstream 1614704 9625244 ~ 9626221 (+)
G122063 NA non-coding downstream 1618058 9628598 ~ 9628833 (+)
AMCG00002215 NA other upstream 569074 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 1377696 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 2753648 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 4438127 3533814 ~ 3542177 (+)
G120742 NA other upstream 5020829 2956908 ~ 2959475 (+)
AMCG00002245 NA other downstream 728231 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 1833665 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 2557372 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 2704259 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 3347012 11357552 ~ 11359840 (+)

Expression


Co-expression Network