AMCG00002234


Basic Information

Item Value
gene id AMCG00002234
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8022677 ~ 8027024 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002234
TGGTTGTCGGTAGTGGAGGCGGAAGTGTCTGTACTTGCAATGACCAGACCCGGAAGATCAATAATGCTCTCATTATTTAAGAAACCTAAACCGGTCAAACTCCGAAGTCTTTGTAACAATCAGAAATATGGGATGGCAGCTACGAGTGTGAAAGAGCTTCTTAAAAAAGgctgtaaaatattaaagGTTCCTGTCTCTGGCTCTCGGGTGTGTTTGAGTGAAGATGGCACAGAAGTTAATGAAGGGTATTTTCAAACACTCCCTGACAACACTGAAGTAATTCTACTCACGGAAGGACAGACCTGGGATGAATTCCCATGTGATGTAAGCCTGTTGCTGGGCAGCTCAGACCACCACACAGACCTCCTGATTGAGTCGGCGAGGAACCTCCTCTCAGACGAACGAGCCCCAAAAAGACGCAAGATTCTGCAGGACCTCCTTCACAACCTGGCCGATAGCTCTGAAGCagagggcagggaggaggacATGGCCTGGTTCCAAGGTGTTGATTCCAGGTTTAAGACTAAGTCAGCGTACATGACGTACAACTGCGAGAACAGAGTGCGGGGATATCTCAAAGAGGTTGAAGGATATTCTCAGAACATAAAGTGTCCCAAAGTCCAGAGGGAGTATAAAAAGACGGTGGAAATCATGACCGAGACACTGAAATCAGCGAAGTATAATGGATGTTACTTCAACAGGAAAGACAAAGAAGCCAACCGACTGTGCACTGCGGAGGGCTGGTTTACCTGTCAGGGTGCGTTTGATCAAGATCAATGTACGTCTCTACACTCGATCAACCCCTACGGGAACAGAGAGAGCAGGATCCTCTTCAGCACCTGGAACCTGGACCACAGGATAGAGAAGAAACGCACCATCATCCCGGCCCTGGCAGTTGCACTGAAGAAACACACAAGCAGTGACATCAACTGGGAGTATTTCTACAGATTGCTGTTTACCCGAGAGAATTTGAAATTAGTGCACGTTGTGTGTCACAAGAAAACTGTCCATGACTTGCAGTGTGACTCCACCCAGATCTACAATAAAGCAAAGCGGCGCAGAAAATGAACACTACAGGCACTTGCATGGCAGCTGATGTTAACCGGTTGGGCTTTTATCTGACTGAAAAATCTCAGGGCAACTAATTAATTGAAAGTCTTTGGGAGACGAGCAGAGCTACATGTCTAGGATTTTGAAAAAAGACAGTATTATAATGTGATTTGCATTAGGAAGACAAAGGGGCTTAATATGACCtcaatatttttagtttattttaaaaagtgagtttttgtttttatgaacttaacactgatataatttgtttttcttgtatttaagATTGCAATTTTTGGAAGCAACTATGATTAATAACTGTTCTTTCAAATCTGTCTAATTACAGAGCTTCCAGGTTTTAAATTATGCCTTATTGTGATCTGCAGACCCACATACAAGTAGTTGGTGGTCAGCCTACTTGAATTTAACCTGTAAATGCTAgatgttttagattttatttttgttacaaaataatgcTTTCAATGCCAGTATTTCTTTACATCAAAgttgatgtattttaattattgatttcagtttttgttactgaagcacatttttactttaaataaaatacactgtgaTTTTC

Function

GO:

id name namespace
GO:0006309 apoptotic DNA fragmentation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004536 deoxyribonuclease activity molecular_function

KEGG:

id description
K02311 DFFB, DFF40; DNA fragmentation factor, 40 kD, beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002234 True 1639 mRNA 0.42 7 8022677 8027024

Neighbor

gene id symbol gene type direction distance location
AMCG00002233 NA coding downstream 8459 8012977 ~ 8014218 (-)
AMCG00002226 NA coding downstream 43595 7969903 ~ 7979082 (-)
AMCG00002227 mad2l2 coding downstream 77660 7938460 ~ 7945017 (-)
AMCG00002229 NA coding downstream 115099 7907035 ~ 7907578 (-)
AMCG00002228 NA coding downstream 121011 7888312 ~ 7901666 (-)
AMCG00002237 ajap1 coding upstream 469058 8496082 ~ 8522830 (-)
AMCG00002238 NA coding upstream 679505 8706529 ~ 8708937 (-)
AMCG00002239 gabrd,LOC107690714,LOC107711789,LOC107684467 coding upstream 685441 8712465 ~ 8720117 (-)
AMCG00002240 calml6 coding upstream 783295 8810319 ~ 8813591 (-)
AMCG00002247 NA coding upstream 871601 8898625 ~ 8903588 (-)
G121789 NA non-coding downstream 5602 8016064 ~ 8017075 (-)
G121754 NA non-coding downstream 177361 7830193 ~ 7845316 (-)
G121718 NA non-coding downstream 359000 7662986 ~ 7663677 (-)
G121716 NA non-coding downstream 363826 7657832 ~ 7658851 (-)
G121689 NA non-coding downstream 459930 7561077 ~ 7562747 (-)
G121875 NA non-coding upstream 798407 8825431 ~ 8859003 (-)
G121885 NA non-coding upstream 841621 8868645 ~ 8870698 (-)
G121912 NA non-coding upstream 905139 8932163 ~ 8933163 (-)
G121935 NA non-coding upstream 991102 9018126 ~ 9018327 (-)
G122019 NA non-coding upstream 1111423 9138447 ~ 9213429 (-)
AMCG00002223 NA other downstream 183266 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 2007284 5975725 ~ 6015393 (-)
G120993 NA other downstream 3802800 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 4236133 3784236 ~ 3786544 (-)
G120907 NA other downstream 4306425 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 1581726 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 1730401 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 1803495 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 1809894 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 2242865 10269889 ~ 10279984 (-)

Expression


Co-expression Network