AMCG00002238


Basic Information

Item Value
gene id AMCG00002238
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8706529 ~ 8708937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002238
ATGTGTAAATTTCTGAATGTCCTGCTGGCTACCTTGAGCCGCTTTCTTTTCGCTGTCCATGGGGTAGTGACGGTGTGGTATGTGGTCAAGACAAAAGGAGACCCGGTTTATTGGCTGCTGCTGTGTGGCATTGCCCTTCTGGGAGTAGAGATGGCAGTTACTCTGAAGTGCACAAGGAAAGGCGAGTGGAAATGgTTCTCACCGATGGTGTTTCTGTACCTCAGCACGGTCATCCCTTCCATTTGGTTTCTGGAACTCAATCTGCTACAGTCAAGGCACCCGAATAACACGTCTTCCAAAAACGATTTACACCTATTAGATATACCAATACCAAGGGAGCTGACTCACCTCGGGCCAGAAAACTGGGCGGCTGGGCTGGAGCAGACCATGCTGATTGTGCTGGTTCTGGGACGCTGGCTGATGCCGAAGGGGGATATGTCTCGGGATCAGCTCTCCCAGCTCCTCATGGGCTACATGGGCCTGGGTGCTGACATCCTGGACATCTTTGACACCTTCAAGGAGAAGGAGGTAGAGAGCGACCGCATGATTCTGCTCATCGGACTCAGCCTCTTCACCTGGGCTCTCTTGCAGTTCCCCTTGGTGCTAACCCAAACCAACACTCCACATTCTCAGTCAGTCTCAGGCAGTCCCTCCGGGAAAGGCAAAGAGTCCAGTCTGGACAGAGCAGCGGCCAGTCGCTGGGGCCCCAGCTGCTCCACTGAGTTCTGGGCTTTACTGGTCACAGTGGGCATGCAGGATGGCCCCTTTCTCATCTACCGGCTCTACCTGATGATTCAGGAGCACGTACTGAACCAGATGATGATCTTCTTCACCTGCAAGAACATCCTCATAGTCCTTTTAGATATCTACCGCATTGTAGTCCAGTTTGAGAAACCCCCAGAAGAAGCCGTGACTGACCACAGCACCCCTTTCTACAGTGAAGAGCTGCAGAGACCAGAGGGAGATGATAAAGATCAGGAATCTCAAGCCTGA

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002238 True 993 mRNA 0.52 3 8706529 8708937

Neighbor

gene id symbol gene type direction distance location
AMCG00002237 ajap1 coding downstream 183699 8496082 ~ 8522830 (-)
AMCG00002234 NA coding downstream 679505 8022677 ~ 8027024 (-)
AMCG00002233 NA coding downstream 692311 8012977 ~ 8014218 (-)
AMCG00002226 NA coding downstream 727447 7969903 ~ 7979082 (-)
AMCG00002227 mad2l2 coding downstream 761512 7938460 ~ 7945017 (-)
AMCG00002239 gabrd,LOC107690714,LOC107711789,LOC107684467 coding upstream 3528 8712465 ~ 8720117 (-)
AMCG00002240 calml6 coding upstream 101382 8810319 ~ 8813591 (-)
AMCG00002247 NA coding upstream 189688 8898625 ~ 8903588 (-)
AMCG00002249 mmp23b,LOC106572002 coding upstream 225032 8933969 ~ 8946187 (-)
AMCG00002251 mib2 coding upstream 248173 8957110 ~ 8982144 (-)
G121789 NA non-coding downstream 689454 8016064 ~ 8017075 (-)
G121754 NA non-coding downstream 861213 7830193 ~ 7845316 (-)
G121718 NA non-coding downstream 1042852 7662986 ~ 7663677 (-)
G121716 NA non-coding downstream 1047678 7657832 ~ 7658851 (-)
G121689 NA non-coding downstream 1143782 7561077 ~ 7562747 (-)
G121875 NA non-coding upstream 116494 8825431 ~ 8859003 (-)
G121885 NA non-coding upstream 159708 8868645 ~ 8870698 (-)
G121912 NA non-coding upstream 223226 8932163 ~ 8933163 (-)
G121935 NA non-coding upstream 309189 9018126 ~ 9018327 (-)
G122019 NA non-coding upstream 429510 9138447 ~ 9213429 (-)
AMCG00002223 NA other downstream 867118 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 2691136 5975725 ~ 6015393 (-)
G120993 NA other downstream 4486652 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 4919985 3784236 ~ 3786544 (-)
G120907 NA other downstream 4990277 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 899813 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 1048488 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 1121582 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 1127981 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 1560952 10269889 ~ 10279984 (-)

Expression


Co-expression Network