AMCG00002242


Basic Information

Item Value
gene id AMCG00002242
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8906933 ~ 8916579 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002242
ATGGCAAGTGATGGCAAGTCTGGCAGGCCCTTGCCCTGGCGCTTCCTGCATCTATTCCGCAGCCAGCCAGAGCGGGTGGTGCTGGCGCGCAGCGAGAGCTCGCCCGGGGAGAACGTGCTGAAGATCACGATCACCGAAACCACTTTCATCGAAGCCGACTCGGGCGTCTGGAACTCCAAGGCCCTGATGCTGTCCACTACTCTGATTGGCTGCATGAAGATGTATGTCCCCTGCTGTCTGTACAAGCACAAGTCTCGGCTTGAATATCCTCCCAACTTCATCATGATCATGCTATTTGTTGGATTAATGAGGTTTGCGACAGTGGTGCTGGGCCTGGTCAGCCTGAAGAACATAGCGGTGTCCTTTGCTGAGACGGTAAAGAGCTCTGCGCCTCTCTTCACTGTCATCATGTCAAGGTTGATCCTGGGGGAGTACACAGGTCTGTGGGTTAACCTGTCCCTGTTTCCAGTCATGATGGGACTGGCCCTGTGCACAGCTACCGAGATCAGCTTCAACATGCTGGGCTTCTCCGCCGCACTCTCCACCAACATCATGGACTGtTTGCAGAACGTTTTTTCTAAAAAGCTACTCAGTGGGGAGAAGTACAAGTTCAGCCCACCAGAGCTTCAGTTTTACACCAGCGCGGCTGCAGTCATTATGCTCATTCCTACCTGGATCTTTCTCATGGACATTCCTGTGGTTGGGAAGAGCGGCCGCAGCTTCAGTTTCAGCCAGGATATCGTCATCCTCCTGCTGTTCGATGGGGTCCTGTTCCACCTGCAGAGCATCACTGCCTACGCCCTCATGGGTCGAATCTCGCCCGTGACTTTCAGTGTGGCCAGCACAGTGAAGCACGCCCTCTCCATCTGGCTGAGTGTCATCGTGTTCAGTAACAAGATGACGATCCTGTCTGCGATAGGGACAGTGCTGGTCATCATTGGGGTGATGCTGTACAATAAGGCCAGGCAGGCCCAGAGGGAGAGCCTTCAGGCACTGGCCCAGTCCCCCAGCACACAGGACCAGAAGCCCCTGCTTCAGGAGAGTGACATCAAAGCCTCCGAAAACTAGGCCCCTGAACTGGGCTGGGGTATGGGGGCGTGAGCAGTGGAGGGTTTGTGTGGCACCTTTGCTGCTATCAATCTTGCAGgaacttttttttctaatttaatgtCCCAGTACTTTTCTGCTACGCACCACCATTTGAAATCTGCAGACATTCTTCTTTAGCTTGCCCTGGTACAGCCTTCGCAACCGACACAGCAGATATGATGACAGTGTACAGGTGTCCCGTGAAAGGTGTGCTTGTAGgccatctgcttcttttcacactgcGAGCCGGCAGCCAAAACAGCACCCCTAAGTGCCAGGCAGGAGACTAATATGACTGTTGCTGATAGCGCTTGACAAACCCTGAGGCGTCCATGTCAGCACTCTGCAAAATGCGTTCACCAGCCTTTGAGCCCGTCCCGTCACAGTCCGCTAATTGATTAATGGACTGAGTGCATTATCTGGACTGGAGGGCCCAACACACAGTATGAGTTGTGGCTTGTAGGATCAGGTTAGTGATCAGATGTCGTCTTCTGTCCACAGAAACCCTGGCCATTGAGGTAAAAACCCAGGCAGCTTCTTTCTTTCCCCTGATTCACACACCCAACAGCCTGCAAGTATGGAATAAGTATATAGATAAATATGTTGAGAAATGATCACACACTGGAAAACCGCAAACCAGCTCCATTGAAAGCTTGTGACTTGGTAGTTTGCactttccattccattccactCATTCTTAATGTGTTTTCTATGTTGATTATTTTCACGAAGGCCTtctgattaattttttttttttaaacactgctgTTGGGGAAACTCAAGTATGgaagacaacaacaataacaaaaaaaattgcaagTTCTCCAAATTAGAGTGGCCATTTCAGCATTAtctattcattgttttttttttgtttttttttgttttccttcactaTTATCCTTCTCAATCTATAGTAATGACCACAGGGCTGCTGGATTTCAGGGGATCAATTTCAAGCGTTTCAAGGGATCCatttccctctctgtgtgtttcccAGTTTGGGGGAGTTGGTGTTTCATCAGGGCCAAGAcatgagggagaaaaaaatggGAAGACCACAAGTGCGAGATTGCTGTGTAGTTTATAGCTCAAAATGGTTCTGTGATTTTCCTTAAATAATTATGCCACTACTGCTGAATGTGTACCTGGGGGCTAAATGTAGATCATCATTAAATAGAGTTGATCACAGGCTGTCGATTTCTGGTTAGAGCAAGTCActtgttttattcaattatcTTACTGCTAGAAAAGAATGCTCCGCGACCGATGTCAGCACACGGTTCATATCCCGATCTGCTGActgacttcttttttttttttattggtgaaTTCCATACATTCCATACTGTAAAAGAAGGAACAAGAAAGGACTGTGTGGGTGgtttagtttgatttaaaaagttGCTTTCTCCTGATGGTGACAGTGTGTGAATAtgtgcaaatatgttttattccaTGTATTCATTGATActttactaataaataaaaaaaaatgaaatactggacataagtaaaaaaaataataataataataatacaaaaaaaataatagaactcttaaaacatttctgcaatTTACAGCCATTAACATTCCTGGGACCAGAAtgatctttgtctttttttctttttttattccaatgcATCCATAACATCGGAGCAAGGAATCTTTTAGGTTAATTGTAACTAAAAGCTTGCATGTGTGTTCCTCAGTGCAGCAGAGAACAAGAAAAGGACGCTGGAGAAGGGTCATAGAAGGGTGATGGGAAGGTAGATCAGTGACAGGTGATGGAATGGGGCTGTGTTTGTTGTTGAAGGGAGGGACAGACAAGGATATGGGTGTGGAGTCTCGTTTCACATCTCTTGACAGTTGAAAGAAGATGTTTTGGGTAAAAATGTAGGTCAGAGAGAAAACACTGAAGGCGATTTTCATTCAGGCaccaatgtattttacagagaTTGCTAAAAAGGTTTTACTGCTTTAAGGGGATTTAAATATTGCAGGCACCAGGCAGGCAGGTGTGATTTCCGTTTTTTGTTATCAGATTAAAGGCACTTGTCAGTCTGACTCTTTAACAGTTATGTGCCTTTTTAATAGATCAGTGATTCTCTTGACATCCTACTTTCCTGCACAGGATCATTCTTGGTTAATATATTTTGGGTTTCCCTTAATATAAACTGTGGTGTCATGTCACTTAGTGTGCCGTGTAATATGGTACCTTGCAGATTAGAATTACAAATTGATAAATCCATTTGCAGGGCAAGatgagtgtttttgtttagattttttttatctctaGAATTGAATACCTTGTAAATttagataatttttttttgtccctaGTTTAATAAACTACTTATATAATCTCCTCACCTGTTTTGATGAAAGGAAATTTGTGAACAGAGAAAATGACCACTTAATTTAAAGGATGCAGAATGAACTCCTTTCTGtgagaggaaaagaaaactacTTCATACActctactgtttttgtattttcttttgcagtACCGTAGCAGAAATCTAGATCTGAGCAATTGTTATGACCTTGATTCTTCCACTGATCACAGCTGTTTGATTGGTTTTTTAACAACAAGCTGGTGTTTTTCGTCATCCTCCAGTCAGATAGCTATAGTTTTAATCACTTCACAAAACCATATCTCCAGCTTGTTGGCATACTGTAATGAATCGGAAGAAGGCCCGATCGGCCACTGGAGAACACATGCCTTTTTGGAATTCCACTTGTTTCGGCACATTACTTGACCGTGTGCCTAGACTGTACAAGACTATCAAGATTATTGTTGCTTTACATACGTGTGTTACTCAAGTGCACTTTTTGCATCTGCAGTAGGAATGCACACATCAAGTTAATCAGTGTCTCCATCCTGACACCATGTGCCAGAACATGGAAGGGACCTCTTAGTACATATTTGTAGTATTATCCTAAATTGGTTACAGTATTTACTTTCTACAGTCTGTTTCATACTTTGTAATCAAACAGTTTAGTTCTACTAATCCATTCTTCTTCAATATTCAAGAAGCCAGTAcctaggtgtgtgtgttgttgttgttttttgttaccaGTATAATGGACCAGGTTACCATGTTTGAACCGGAGCTTGTGAATGCACAAAGAGTCTAGTGTGCATTTCTGGTACATGGATGTACAAAATGTAGCTATGCTTTTGGTAACTGTGTGCATACTGAaattaagtatgttttaaactgtattaaaaacatttttttttaatggtgaaTAAGCTATATGGTAAGATTAGAGTCTTACTGAAAACCTGTGGATGGAGATACTACTGTTAATGTATTCCTGGAGGCCAAATGTCTTGAGCTTTTTGCTTTATGTACCTAGTATCAACAGATGTAACACTGTGATCCttcttatatataatgtaaaaacactTGCTTTTGTACTCAATTGGCCTTTAGGCTGCAATGGGAGCTAAGAGgaatggaaatacatttgtctTAGTTTTCTATCATCATACTAATTCACAACAGCAGCCGGAATACATTTACACCAGTACTGAAAAGACAGACAAATGGCCTTTTAGTTGTCAAGCAAATAGTTTGAAACTAAGTAACTTAAAGCAGCACCACTGACAGAAGCTGGTTGTCTGTTTGCTTCCCCCTTGGTATAGGAACACTGCTGCAGGCCAACGAGTCAGACGCTAACATATCATTTGAGGTCATCGTTTTGTGTATGAAAACCCACAGTGCTGCTCTTTATTTTGAGTGAGCTAACCTCTCTGCACTGCCTGACCATTTCATTCAGCCTCCTCTGGGTTCTCAACACCCCTTAGAAATTAGTGTTCAAACCAATCGCTTGCCTGCTGTTAAAGTGTTTCAGTGGACTCCTTCCACTTGACAATCTGATGTATGTAAAACATAACCATCCTTAAGCCCAAAGGGGgggtaaataaatgtttctaaatGACAGTTAATAAACTCGGAATGAAAGACAATAACAACGTTTGGTTATTGATAAAGGAAGCCCTGTGGGTGATTCATCAAGGTGTTTGTTTCCTACCCTTGGTGTCCTCTGTAAGGCATTCTTTGCTCCCCACACAATGAATTTAGGGCCATGTTCAAAAATCATTTATCACCACACACATCTATGCTGCTCCTAGTAAGAAAACAGAATTCATCTGTAAAGTGTCCCATATATCTTTTTATATCTCATTGGatgttcaaatgtttatttttatgacataatgagatgtttattttttatccccCCTTTAATCTTCTTATGAatttgtagatgttttttttatttttttgctttataaCATGTTTGTGAACAAGCAACCCTGAATCAAACTCAGTACAGttgcttttaaaaagtttatttttaatcagtttgcTGATTAAAGTGACATGTGAAGgacaaaattatttatattgcctgaaactgtttttattttggaatttgattagatttttaatttgtgtcctCATTGGCCAAgcgtttttaatttaaaagtttaatggtcttcaaatatttttcctttctgtattttgtacatacttgtatgtattttatggaCATGTCTTTAGCAATAAAGAGGGGTGAGATGTATAGCTGTATAAAAGAGGAAAGgccaaaaatgttttggttttaccTGAAATAATGGATCCCATGTCTTGATATgtaaatgttgaaaaataatggaactaataatttaatttaattataggTTTTCCCCCTATATTTAATTATGCTGttcctttgcattttgtaaccTACCAATTTCTTTAGTGTTACCATA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15284 SLC35E2; solute carrier family 35, member E2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002242 True 5876 mRNA 0.41 8 8906933 8916579

Neighbor

gene id symbol gene type direction distance location
AMCG00002244 nadk coding upstream 13095 8873790 ~ 8893838 (+)
AMCG00002246 gnb1,LOC107385217,LOC104919476,LOC100703896,LOC108231344 coding upstream 38969 8859433 ~ 8867964 (+)
AMCG00002241 NA coding upstream 97138 8806116 ~ 8809795 (+)
AMCG00002235 NA coding upstream 727986 8161326 ~ 8178947 (+)
AMCG00002236 NA coding upstream 755079 8128197 ~ 8151854 (+)
AMCG00002243 NA coding downstream 5335 8921914 ~ 8933126 (+)
AMCG00002257 mtor,LOC106941359 coding downstream 107492 9024071 ~ 9026586 (+)
AMCG00002256 mtor,LOC107564227,LOC107727986 coding downstream 110164 9026743 ~ 9049195 (+)
AMCG00002255 mtor,LOC107727986,LOC107564227 coding downstream 163935 9080514 ~ 9119066 (+)
AMCG00002254 NA coding downstream 203830 9120409 ~ 9129343 (+)
G121862 NA non-coding upstream 90380 8816330 ~ 8816553 (+)
G121767 NA non-coding upstream 953309 7945365 ~ 7953624 (+)
G121741 NA non-coding upstream 989690 7910558 ~ 7917243 (+)
G121722 NA non-coding upstream 1072722 7829807 ~ 7834211 (+)
G121688 ski,LOC106572818 non-coding upstream 1258617 7646718 ~ 7648316 (+)
G121981 NA non-coding downstream 331738 9248317 ~ 9313334 (+)
G121999 NA non-coding downstream 626036 9542615 ~ 9562591 (+)
G122058 NA non-coding downstream 708665 9625244 ~ 9626221 (+)
G122063 NA non-coding downstream 712019 9628598 ~ 9628833 (+)
G122086 NA non-coding downstream 777137 9693716 ~ 9759061 (+)
AMCG00002245 NA other upstream 114455 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 1495703 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 2304325 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 3680277 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 5364756 3533814 ~ 3542177 (+)
AMCG00002272 NA other downstream 927626 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 1651333 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 1798220 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 2440973 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 2449035 11365614 ~ 11379568 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_00753574_00762446 S35E2, SLC35E2B coding CI01000050 null 752374 ~ 762767 (+)