AMCG00002245


Basic Information

Item Value
gene id AMCG00002245
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8738771 ~ 8792478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002245
ATGGCAGAGGCTCTggatgaagaagaagaggaagctACAATGCCAGTGGGATCCATTGGGGAGGAGGGTGAGACAGGTTTGCCCGAAGACTGTGGCCGTAGTAAGAAGAGGAGCTGCGCTGAGAGAGTGCGGATGTTCAAACTGAGAAGAAACCTGGACCAGTTGGACTCCTTCCACAAACAGAAGGAGCACGACGTTCTGAAAGCcagGGAGGAACTGAAGGCTTGCCGGCTGCGAATCACAGAACTGGAAAAGCAGCGGGACGCGGTGGAAGGAGAAATCGAGGAGCAGCTAGAGCCAGAGAACATGTCGGTATACATGCACATGGGCTTGGAAAAAGAAATCCATCAACTTCTGGTTGCAGCTCTGCTCCGCCTGAGGGCATTGCATAATCGGATTTGCATAGAGCTACAAGGGGAAGAGGACCTCGAGTCACAAATCGCATTGGTGCTGAGGGAAAACGAGCTGGAGCTGTGTCAGGTGGATGTGGAGCTGGGGCATTTCTCAGTCCTGAGACAGGACGTTCAGAGGGAGCTGCAGGCCTTCGAGGAGCAGCAGGAGCGAGAAGGGGCCCGCAGGCTGGAGCAGGAACAGGCGGCTGCACGGGGAGCCCAGCTCAGGAACCAACTGGAGAAAAAAAAACAGATGAATTCCCTGAAGCTGAGAGAGGCCCGATATCAGAAGGTAGTGGAGGAGGCTCAGGAGAACCACAAGAAGGCAGTTGTGTTTCTGAAGAAGACGATGAACAGAGTTCGTAAGAAAGAAGCGGAGGAAGAACTGAAGAGTCGCAAAGAGTTAGAGAAGCGAATGCAggctgttctctctctcaagaCCAGCATTGCAGTCACAAAGGAAAACCTCTGCACACTGCAAGCGCGTGATAAGGCCAAAATCACAGCcgagaaggaagaggagaggcTGCTGAGGGAGTCTGTGCGGGCCGAGGGAGGGGACGTCACCAAGTACACGTATCAGCAGAAACGATTGCGGgagtttgaaagaaagaaacaAGTATTGGAGGAGCATCAAAAATCCAGGAAGGTTGAAATCATCTCCAAGATCCTACAGGAAGAAGCCTTAATGGAAAAACGCAAGAAGGATCAACCTCAACTTTTTCCAGCCTCTAGGAAGAGCCTGAATAAGGAAGCTTTTTCTCGGAAGTCTCATGAGAAATTGTTGCAGTACTTAGACACAACTTTCAGGGAGAGTGAAAATGAAAGCTACACACCTGAGTGGCGTACCCCTTCTCCAATGTCAGAGGATGGGGATCCCTTGTCTGAAGATGAACTACTGTTTCCGGCAAAGCCATCTGCCTCTCTGGACTACACTGAAAAGATGAAAAGAGAAGATGATGAAgaggaaaaggagaaggaaGCAGAGGAAAGTCTTGCCTTACCTGAATTTACAGGACTGTGGGATCATAAGCATAAGCAATACAAGATACCTCAGGATGAGCCTTTATCCAAACCCGTCCATTCAAGCAAAATGGAGCAAGAGATTTTAGCCCGAACTCTGGAGAAACATCGGAGCACAATAGTCCGAAAGCAAGTGGCAGCTGGTAGAGAATTCAAAGGATGTCCTTTTTATAGCAAGCCAGAACTCATTCACTTCAAGGATTTTGACATAGGAAAGATATACAAGAAGAAGGTAATGCTGACCAACATCTCGTACGCTATAAATTTCTGCAAGCTGCTGGGAGTCAGCGAGCACCTGAAAGATTTCATTACCATCCACTTCAAACCGCCTGGACAGTTGTCTGCTGGAATGGCCTGTGATATGTTAGTTACCTTCAAACCAATGGTAAATAAAGATCTGGATGGAGAAGTGCAGTTCCTATCTCAAACGGGGCCTTTTTCTGTACCTCTTAAATGCACCATAAAGAAATGTGATGTGAGTTTGAAAAACATCAGTCCCGCACCCCTAGATcccaGCAAGGGAAAGCTCACTATTTGTCTTGCTCCTTCCCTCAAACAGCTGGTCGTGGACAGCAGGCTCATTGACTTCGGTACCCATGTGGTGGGGGAGACAATTTCACGGGCAATCACTCTGACCAACCGAGGGGCCCTGGGAGCACACTTCGTTCTGGTGACATCATCGGACTCCGGCGCCGTCCAGCTAATATCAAGGCCCTCCTCTGTGCAGCCAGAGGTGATGAGCTGTGCTGGGGTTGTATCAAAACAGCAAGGCAGCACTGTGCAGCTGGAGTCTGGAGAAGAAGGTCAACAGACTGGCAAGAATCAGGAACCATCCCATGGTACACTCTCTCTTAGTGATCAGACGCTGGTAGGGCCTGTGGAGCCAGCAGCAGAGGTAACTACTACAGGAGAGAATACGGGAGTGCTGCTGGGGTCCAGGCAGCAGGACGCATTGGAGACCACCGAGATCAGGCCTGGAGAGCTGAGGGAGGGTGAAATTGGCCCCTTCGGATGCGTCAAACTGCAGGTCATTTTCACTCCAACCATCCCTGGAGAAGTTCAGATGGACTTCGATATCAAATTCTCTGACGCCAGCTCTCCACCAATCCCCATTACAGTTCGAGGAGTTGCTATTGATGTGCCTGTATGGGTGGCGCAGCCAAACATTGACTTGAAGATCTGCATGTACAATCGCCTTTATCAAGACAGCATCGTTGTACATAGCAGGGCGAACACTGCTCTCCGCCTCACGTTTGAGGTGTGCCAGGAGCTCAGGAACCACATGGAGATGCTTCCTAAAACCGGCTACATCCAGGCCCAGTCCACCTTCAATGTGCAGCTCAAATTCCTGCCCAGACATTCCTTACCTATGGATGCTGAGGGATACTTTGATAAAGAAACAGGTGTCTTAGAAGTCCCTTTGACAATACAAGTAGCAGATCAGGCCCGCCCTGTCCTGTTCATCGTCCATGCTGTTGTCACGACTTCTGACTTGGAGTTTGACAGGACTGAACTGGATTTCGGACACTGTTCCATCTATGAGTCCGTCAAGACCAGTGTCCGCCTCACAAACCACTCCCTTCTCCCTCAGGAGTTTGGCTTCGTGGGAATCCCGAAGTCTGTCGATGTCCAGCCCAACGATGGCTTTGGTACTGTTCTTCCTCGGGAAACCTTGCAGATCGATTTCATATTCAGTGCAAAGAAGGCGCGAGAATACAACTTTGAACTGACCTGCAAATCCGGCATCAACAGAGATTTCAAGTTGTCCTGTAAAGCAGTGGGGGTCCACCCACCCTTGGAGTTGTCCCACTCTTTAGTAAAGTTTGGTGCGACTGCGGTGAATGACACATCCGTGGCTGCTTTGTACGTGGTGAATTCTCACACCAGCCGCAACGAGTTCTCCCACCCCGTGCCCAGGATCAGCAAGGGGGAGATCGCACCTGTGGGACCCACTTCATTTGAGTTTGTCATCCCGGAGAATTCAGACATCACCATCACCCCAGCTGTGGGGACTGTAAAGCCAGGCAAGAGGTGCCTGGTCCAGGTGTACTTCAGGCCTGATCTCCACAACGAGGCAGTCAGGGAGGAGGCTGTTCGTTTATTGTGTCAGGCTGAGGAGTTGCGGGAGCTGGAGAGAACCGAGAAGGAGGCGGCGAGCACCAAAAGTGCTCAGCTGGAGGCAATGAGTGAAAAGGAGACTGCATCTGATCtgaagaaagggaaaaagcaGGCCAATCAGGGCTCGGCTAAGCGCTCCGCAAAGGAGAAATCCAACAAAGAGTGTCTCTCACCCAAAACCTCCATCCCCTTCCAGCCTCCTAGTCTGGGAGATATCCACCACGATTCAGATACATATGCTGCAGGAAGAGCTTCCTTAATCCGCTCTTTCAAGGACTGTTTTAAGACCTACACCATCCCCTGCTTCATCACTAGTGGAGAGGCTGCCGAACACAAGGAACCTGGACATCTGCAGTACAGTCCCTACAATACTCTGTACCTGGAGCTGCACTGCCCCGTGGTAAGACCCCCTCTTGTGGTCGTCTCAGACAATGGCAGGACGGCAGTGAACTTCAGTGAGGTGGCAACAGGTCACAAAGTTGTACGGAGGGTGACAGTGCAGAATATTTCTCATGACTCTCTGGAGTTGTTTCTGCAGCTGAGGTCCTCAGTTCTTGATCCCAATGGACCTTTTGTACTTCTGAACGCACTAAGGGCCCTTGATCCAGGAGCCACCCacaccctcctcctctccttcactcccgCCAAAGGGAAGAAGGCaagttgtTACTATGAGACCTTGGAGATCCGAGCCACCACGATGACCCTGCGACTGAACCTCTCTGGCGTGGGTTTAGAGCCTTCTGTCAGCTGCTCAGTCGAGGGAGGCATCCTCCGTTTCGGCTACGTGATAGAGAACGAAAGTGCGACCCAAGTGTTTAAGTTGCACAATACCTCCTCCCTCGTGGTGAACTACAGTGTGAAGCTGGACAGCTGGTCTCTCACACCGCAGAAGGAGGCACAAGGCCTCCCACCCTTCCTCTACACAGGCACACAGCCGCAGACTCTCGTGGGCACCCAGAATTACAGCGGCCTCAGTGTATTCAGTGTATCGCCCTTAGAGGGTGCAATTCCCCAAGGCAAGACCCAGGACATCACCGTGACTTTCCGGCCAGACCACCAGAGTCTCTACTACTCCGACAGACTCAAGGTGGAGCTCATGAACAAGCAAACAGTGCATGAGATTCGGCTGAAAGGAGCCGCCCGCAGCCACACCATGTTTCTGAGTGGAGGAGACCCTTTGGACGTCCCTGTCGAGTCCCTGGCCTTTCTCCCCACCAATGAAGACCCAGACAGTGCAGAGAGACCATTGCATCCTGTCCTCCTGACCCTAAAGAGTGTGTCCGGCCACGACACTGTGACCCCAGCCGTCCGGGAGCTGGAAGTGGGGTGTATCCGGTGCACACGACCCGTGGCTAAAAAGAACGTGGAGTTTAGTTGGGATAATCTGCCAGCCCTACAGCAGAAAGGATTCAGTGTGGATCCAGCGAGAGGAACAGTAGATCCAGGACAGAGGAAAACAATAACTGTGATGTGGGTGCCCCCCAGTGGCCAGGATCTGTCTCagcctctctgtgtctcagcaCCTCTGACCATGAAGGGAGATGTGACTGAGGTCTACAACATCACCCTGCTGGCCCTGATT
>TU152752
AGGTAATGCTGACCAACATCTCGTACGCTATAAATTTCTGCAAGCTGCTGGGAGTCAGCGAGCACCTGAAAGATTTCATTACCATCCACTTCAAACCGCCTGGACAGTTGTCTGCTGGAATGGCCTGTGATATGTTAGTTACCTTCAAACCAATGGTAAATAAAGATCTGGATGGAGAAGTGCAGTTCCTATCTCAAACGGGGCCTTTTTCTGTACCTCTTAAATGCACCATAAAGAAATGTGATCTGGTCGTGGACAGCAGGCTCATTGACTTCGGTACCCATGTGGTGGGGGAGACAATTTCACGGGCAATCACTCTGACCAACCGAGGGGCCCTGGGAGCACACTTCGTTCTGGTGACATCATCGGACTCCGGC
>TU152757
ATTGCATCCTGTCCTCCTGACCCTAAAGAGTGTGTCCGGCCACGACACTGTGACCCCAGCCGTCCGGGAGCTGGAAGTGGGGTGTATCCGGTGCACACGACCCGTGGCTAAAAAGAACGTGGAGTTTAGTTGGGATAATCTGCCAGCCCTACAGCAGAAAGGATTCAGTGTGGATCCAGCGAGAGGAACAGTAGATCCAGGACAGAGGAAAACAATAACTGTGATGTGGGTGCCCCCCAGTGGCCAGGATCTGTCTCagcctctctgtgtctcagcaCCTCTGACCATGAAGGGAGATGTGACTGAGGTCTACAACATCACCCTGCTGGCCCTGATTGTGAGAGCGTCTGGATTAGCACAGGAAGTGTGAGATCAGCACAGAACTGAAAGATGATAAAATTATACCATAATGTCTGTGTTGTACAAAAACAATTGAGAGAAGATAGGTAGACAGACAGTGATAAATAGACAgtgcaaatctttttttttataatttaaatcattaaaaaaaaacatattatttatctaatttatctataaatgtatatacactataagtacatttttaagGAATAATACAGTGAGGATTTACTTTTACCCCAGAGCTCAGTAGTGccacatattacatatatttctgcTGACAATTTATATACTACAGCACACTTACACAGTGCTAGGGGAGAACCCAGATGAGCAGCCAAGGAGGACAGAAAATGATCCCCcatacagttttattattaaagaaaaatccATTGTTAACATGCTGTGAATTCAGTACCTTAGATAAGACTAATAACTTGCGTTAACAGGGGAGTAGGGCATTAGCCATTCCTCCATTGCTTTCTGGAGAGGACCACCTGCATTCTTACCAGCCATGCATTCCCCTCGCAGTTCACAAAGAAGTGTCCTACTTTCTTCCAGatgtttattaacttttttgCCTTGGTTCCTGTTTTGCCTGTGGTCTTTTTGTTTGAGAAGGTGTCTTGCTCATATTTTACTTGCCCTGTGCAACAACATCCATCATTGTCCCAGACAGGTGCCAGATATATTGGGAGAGAATGTGATGGATGAATATTGACAACTTTACTCTGTTGCTTTGAACAGAAAACGAAATCAACGGGTGTCACTCTTTGGTAAACTCCACAGCAATATACatcagatgaaaagaaaaatttTGTATTGAGAATGTATAGGTAGGGATAAGACCAGTTATTCTAAACCTACTGTTTAGgtgtaaatgttaattacaaCAATGTGAATCTGTGGGAATGTCTTGTCACTTTAACTTGCGatgcaaaaataaacttcaTCTCAATCTCAAAGATCAGAGTTGTCTGCTGCATTGACTAAAATTGGATGGTTTTCTTTAATTGCAGCACAAACACCTACTTCATGAAACACAGCCTTACTTGTTTCAGCAGGACATGGGCTGAAAAACTCCTCTGCCCTCACTTTAAAAGAAGCAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002245 True 5118 mRNA 0.52 37 8738771 8791343
TU152752 False 377 TUCP 0.49 4 8753726 8762079
TU152757 False 1472 lncRNA 0.41 3 8790301 8792478

Neighbor

gene id symbol gene type direction distance location
AMCG00002235 NA coding upstream 559824 8161326 ~ 8178947 (+)
AMCG00002236 NA coding upstream 586917 8128197 ~ 8151854 (+)
AMCG00002231 NA coding upstream 716393 8016893 ~ 8022378 (+)
AMCG00002232 NA coding upstream 728231 7980304 ~ 8010540 (+)
AMCG00002224 NA coding upstream 800838 7927590 ~ 7937933 (+)
AMCG00002241 NA coding downstream 13638 8806116 ~ 8809795 (+)
AMCG00002246 gnb1,LOC107385217,LOC104919476,LOC100703896,LOC108231344 coding downstream 66955 8859433 ~ 8867964 (+)
AMCG00002244 nadk coding downstream 81312 8873790 ~ 8893838 (+)
AMCG00002242 NA coding downstream 114455 8906933 ~ 8916579 (+)
AMCG00002243 NA coding downstream 129436 8921914 ~ 8933126 (+)
G121767 NA non-coding upstream 785147 7945365 ~ 7953624 (+)
G121741 NA non-coding upstream 821528 7910558 ~ 7917243 (+)
G121722 NA non-coding upstream 904560 7829807 ~ 7834211 (+)
G121688 ski,LOC106572818 non-coding upstream 1090455 7646718 ~ 7648316 (+)
G121680 NA non-coding upstream 1176039 7561066 ~ 7562732 (+)
G121862 NA non-coding downstream 23852 8816330 ~ 8816553 (+)
G121981 NA non-coding downstream 455839 9248317 ~ 9313334 (+)
G121999 NA non-coding downstream 750137 9542615 ~ 9562591 (+)
G122058 NA non-coding downstream 832766 9625244 ~ 9626221 (+)
G122063 NA non-coding downstream 836120 9628598 ~ 9628833 (+)
AMCG00002215 NA other upstream 1327541 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 2136163 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 3512115 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 5196594 3533814 ~ 3542177 (+)
G120742 NA other upstream 5779296 2956908 ~ 2959475 (+)
AMCG00002272 NA other downstream 1051727 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 1775434 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 1922321 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 2565074 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 2573136 11365614 ~ 11379568 (+)

Expression


Co-expression Network