AMCG00002246 (gnb1,LOC107385217,LOC104919476,LOC100703896,LOC108231344)


Basic Information

Item Value
gene id AMCG00002246
gene name gnb1,LOC107385217,LOC104919476,LOC100703896,LOC108231344
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8859433 ~ 8867964 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002246
ATGCGCACTAGGCGAACATTGAGGGGTCATCTGGCTAAAATCTATGCCATGCACTGGGGCACCGATTCTAGGCTGTTAGTGAGTGCCTCCCAGGATGGCAAACTAATAATCTGGGACAGCTATACAACAAACAAGGTCCACGCCATCCCCCTGCGCTCTTCCTGGGTGATGACCTGTGCATATGCCCCTTCTGGAAACTATGTAGCTTGTGGTGGACTGGATAACATTTGCTCAATTTACAACCTGAAAACTCGCGAGGGGAACGTCCGTGTGAGCCGTGAATTAGCTGGACACACAGGTTACCTGTCTTGCTGTCGCTTTCTGGATGACAACCAGATTGTAACCAGCTCTGGAGACACCACCTGTGCTCTGTGGGATATTGAGACTGGCCAGCAGACGACTACATTTGCTGGCCACACTGGTGATGTCATGAGCCTCTCCTTGGCACCGGATGCCAGGTTATTTGTTTCTGGTGCTTGTGATGCCTCTGCCAAACTCTGGGACATAAGAGAAGGAATGTGCCGACAAACTTTCACTGGGCATGAGTCGGACATCAATGCCATCTGTTTCTTTCCTAATGGCAATGCATTTGCAACGGGCTCCGACGACGCCACCTGCAGACTCTTTGACCTGCGTGCTGACCAGGAACTGATGGTTTACTCCCATGACAACATCATCTGTGGAATCACCTCTGTAGCTTTCTCCAAGAGCGGCCGCCTGCTGCTGGCCGGATATGATGACTTCAACTGCAACGTCTGGGACACCCTCAAAGCTGACCGTGCTGGTGTGCTGGCAGGGCACGATAACAGAGTTAGCTGCTTGGGTGTGACTGACGATGGTATGGCAGTGGCAACCGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTAA

Function

symbol description
gnb1 Enables GTPase activity and GTPase binding activity. Predicted to be involved in adenylate cyclase-activating dopamine receptor signaling pathway and cellular response to prostaglandin E stimulus. Predicted to act upstream of or within several processes, including cardiac muscle cell apoptotic process; cellular response to hypoxia; and sensory perception of taste. Located in extracellular exosome and lysosomal membrane. Part of heterotrimeric G-protein complex. Implicated in acute lymphoblastic leukemia; autosomal dominant non-syndromic intellectual disability 42; and myelodysplastic syndrome.

NR:

description
PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002246 True 891 mRNA 0.52 7 8859433 8867964

Neighbor

gene id symbol gene type direction distance location
AMCG00002241 NA coding upstream 49638 8806116 ~ 8809795 (+)
AMCG00002235 NA coding upstream 680486 8161326 ~ 8178947 (+)
AMCG00002236 NA coding upstream 707579 8128197 ~ 8151854 (+)
AMCG00002231 NA coding upstream 837055 8016893 ~ 8022378 (+)
AMCG00002232 NA coding upstream 848893 7980304 ~ 8010540 (+)
AMCG00002244 nadk coding downstream 5826 8873790 ~ 8893838 (+)
AMCG00002242 NA coding downstream 38969 8906933 ~ 8916579 (+)
AMCG00002243 NA coding downstream 53950 8921914 ~ 8933126 (+)
AMCG00002257 mtor,LOC106941359 coding downstream 156107 9024071 ~ 9026586 (+)
AMCG00002256 mtor,LOC107564227,LOC107727986 coding downstream 158779 9026743 ~ 9049195 (+)
G121862 NA non-coding upstream 42880 8816330 ~ 8816553 (+)
G121767 NA non-coding upstream 905809 7945365 ~ 7953624 (+)
G121741 NA non-coding upstream 942190 7910558 ~ 7917243 (+)
G121722 NA non-coding upstream 1025222 7829807 ~ 7834211 (+)
G121688 ski,LOC106572818 non-coding upstream 1211117 7646718 ~ 7648316 (+)
G121981 NA non-coding downstream 380353 9248317 ~ 9313334 (+)
G121999 NA non-coding downstream 674651 9542615 ~ 9562591 (+)
G122058 NA non-coding downstream 757280 9625244 ~ 9626221 (+)
G122063 NA non-coding downstream 760634 9628598 ~ 9628833 (+)
G122086 NA non-coding downstream 825752 9693716 ~ 9759061 (+)
AMCG00002245 NA other upstream 66955 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 1448203 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 2256825 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 3632777 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 5317256 3533814 ~ 3542177 (+)
AMCG00002272 NA other downstream 976241 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 1699948 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 1846835 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 2489588 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 2497650 11365614 ~ 11379568 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_00646585_00650863 GNB4, GNB1, GNB2, OL-GB1, GNB1A, GNB1B coding CI01000306 null 646572 ~ 650863 (-)