AMCG00002249 (mmp23b,LOC106572002)


Basic Information

Item Value
gene id AMCG00002249
gene name mmp23b,LOC106572002
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8933969 ~ 8946187 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002249
TGTGTGTCCGCTAGTTCAATGAAAGCAGACGCGGATTGTTCAAAGCTTCATTTCTATGAGTCTCGCTTATATTATGGGCACTTTCATCAGATGCCTTGATGGGTTAATCTGTTTCTTCTCTGCAGAAACTGTCGACGCATGTGCAAAAACTGAGCTGAGGCCAGAAACCGTTTTCAGTTCAAGATGCTCCAGCTGTTTTCCTTTGCCTTCACGTTGACGAGCGCTGACCGCCGTGTACAGTAATGTGATCCTCTGCGCGTCTCTGGTGCTCAAGCTGCCTGTCCGGTGAAGTGGGACGGGGGCTGCGGTGCTGGCGGTGAAGACTTGCAACACCAATTCAGTCAAACACAGGTTGAAAGAGTGTTGCAAGAAGAAGATGTTTGACCGGTCCTAGCAAACGGTGGACATATGACTTATTGTGCGTCTTTCCAAAGGAGAAGCTGCGCAGTCGGCACGCCGGCGATGCAGTGTCATCTGTCCGCAGGCGGGCGGCGGGGCGACCCCGGGCTGCTCCTCGCAGTGTCGCTGCTGGGCGCCGCGGCTCTGCTCGCTGGGATCCAGGGGGCCTCCGCGCTTCCCATCTGGAGCTCGAAGGAAGAAGCTCAACCCTCCAGCGTGTTAGTAATTGGATTTCGACCCGAAGCCCTGTCTCGAGTGCTCCGTCTCTCCCGCAACAAGCGCTACACTCTCACCCCGGAGAAGTTAAAATGGGACAAGTTCAAGCTCACTTACAAGCTGCTGTCATTCCCCAAAAACCTGATGAATGCCAGCGACACGCGTAAAGGGATGGCCAGGGCGTTCAGCATGTGGAGCGATGTCTCTCCCTTCAGCTTTAGGGAGGTTCCTCATGACCAGGAGGCTGACATCAAGATAGGCTTTTACCCCATCAACCACACAGACTGCCTCAAGTCCTACCTGCACCACTGCTTCGACGGGATCACTGGGGAGCTGGCCCACGCCTTCTTCCCCACAACGGGAGAGATTCACTTCGACAACGAGGAGTACTGGATCCTGGGAGACATGCACTTCAGCTGGAAGAAGAGAGTGTGGCTGACAGACTTGGTCCATGTGGCGGCACACGAGATTGGCCACGCCCTGGGCCTGATGCACTCCCTCAACCCCAAGGCCATCATGCACCTCAACGCCACACTCACTGGCAGGAAACGCATCACCCAGGATGACGTGTGGGGCCTCCATCGGCTGTATGGGTGTCTGGACAGGTTATTCATCTGTCCTTCTTGGGCTCGGAAAGGATTCTGTGACAGCCAGAGAAAACTGATGCAAAAGCACTGCCCTGCTAGCTGTGATTTCTGCTACGAATTCCCCTTCCCCACTGTGGCTCCAACGCCTGTTCCTCCCAGAACCAAGACCAAGCTGGTCCCTGAGGGCAGGAAACTCACTTTCCGCTGTGGGAAGAAGGTGGCTGAGAAGAAAGGCAAAATTTACTGGTACAAAGATGGAGAGCTCCTAGAGTACTCCCAGCCCGGGTACATCTCCCTGAAAGACGACCATATAAGTATCGTTGCCAACGCCATCAATGAGGGCACCTATACCTGCATCGTGAGGAAACGCAACAAAGTCCTTACCAACTACTCTTGGAGGGTCAGGATTCGATTCTGACCAGAGTGCAGTCACCCACCCCATGCATAGAGCACTGTGGACAAACACGGAGGAAAAAGCTACAAAATTAAGCCCCTGCTTTCCAAATCTAAagcaccacccccccccccccccccccccccccccacacaaccTTTGCTAAGAGTTTTTGTTGGTCTTTGTTTAtggtttttggtttgattttgaaatgagaTGGCTGTCTTGATTTGTAAGATGGTTGCAATCcaagtaaaacatttgaataaaaaaagataaaacccTTCTGGAGCTTGACCAATTGTACAACTCCTATTTGTTGTCTTTGAAACTCCCATGCCAAAGTTTGAAATTAATATACGAGTAGGAGATACtgataaattaaagaaacaaagaagaaaacattcctactgaattacacaatgtactgGCTCagatttttcaatttgtattgtttatttttcttgtactgGTTTACAAGTACACAGGACTAGCAATGTCACTGCATTTCCACTCAGATCACTATCCTATACTTATTGGTATTATTGGAAAATTGGCGAGTTAATGTCAAATAAAGGTATCAAAATTCACTGAGcacttttgtttgattttgatcATGTAGTGTcagttttaaaattgtgtttttgtattatgtcAATCTGTTTGTTCTTGGTCGGAAAAGTGGAAAGTATTGTTTGCCACTGTAATTTTAGTCACACTATCTGGCAGAAAATTATGTTTATCAGATTTGTCCCTAAAATATGAATCCAGGATTACTGCAATTTGCTGTCTGATTTTGATTCATGGATTTTGAGCTTTTTGTAATTCTCTCTTAAATTTAGGTtacatatgcattcattttctacTTTAGGATAGAGACTGTTAATGAATCACAAACGCAAGAAGGCATATCAGTGAGGGAGGAGGTGCTGTTTAACTTAATAGATGAAATCGCAGTGTTTAGAGACTTCCCAAAGCCATTGACTATCATCTCCTAACTCCCTGCTGGGGCTACAAGATGAAATCTAGGTTCAGGGCCTACAGTTTTTAGTCTATGAATCAAGAGGTTTGCCGACTGTTAGTTCCAAGTAATAATTTCCTGCAATCAGAGACTTGGCTCAGAGTACTTGCTGTAGGACTGGGGCTTggaatttaaaattgtaataaaaactgaaattaaagttCTTACACAAATACAGAACCAAAACTGTGGACAATATTCAAAGCTTGCCAAGTTAAGAAAGCTGAAAATATGTGTAGACTAAACAACTGGGAGAAACCTGGTTCTCCTTTCTCAGGGGAAACCTAACCCTTACACTAGCACAACACAAACCATAACCCTAGTCTAGTCTGAATGAAACCTTGACCTTTTGTTTTTAGTGTACAATTAAGCTGAACTAGTGGAAATACTACTGTAAAGCAATAAAtagaattgtaaaataattctTAGCTTCTCTTTGATCCATTCTTCACACTTATCAAAAACTTTACCCTGAAACAGCACAGTGGTACAATTACCCCTTAGGCAGGTCTGAAACAAGGCTGAGTGGTAGATGGTTTTCTTCATGGTAATCATCTTTATGGGCATTAAGTCCAATATAAGACTCGTTGCTTGGGGTGGATGATCATTAGACGatagaataataaaatgacagttATGCAGTTATTTCATGAGGGCAAGTTACATTATGTGCTACATTTCCTTCCCATTCAATTTATAATGGCAAAGATGCCTTTACTGGACAATGCATTACTTTCCCCCCTTGGCTGAATTACTTGCATTTAACTTacataatgaaaaatgacaagTTTCAAAGTCTGTC

Function

symbol description
mmp23b Enables metalloendopeptidase activity. Involved in proteolysis and reproduction. Located in collagen-containing extracellular matrix.

NR:

description
PREDICTED: matrix metalloproteinase-23-like isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08001 MMP23; matrix metalloproteinase-23 (CA-MMP)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002249 True 3419 mRNA 0.45 8 8933969 8946187

Neighbor

gene id symbol gene type direction distance location
AMCG00002247 NA coding downstream 30381 8898625 ~ 8903588 (-)
AMCG00002240 calml6 coding downstream 120378 8810319 ~ 8813591 (-)
AMCG00002239 gabrd,LOC107690714,LOC107711789,LOC107684467 coding downstream 213852 8712465 ~ 8720117 (-)
AMCG00002238 NA coding downstream 225032 8706529 ~ 8708937 (-)
AMCG00002237 ajap1 coding downstream 411139 8496082 ~ 8522830 (-)
AMCG00002251 mib2 coding upstream 10923 8957110 ~ 8982144 (-)
AMCG00002252 mib2 coding upstream 49515 8995702 ~ 9005887 (-)
AMCG00002248 ubiad1 coding upstream 72420 9018607 ~ 9022271 (-)
AMCG00002250 NA coding upstream 109127 9055314 ~ 9061095 (-)
AMCG00002260 NA coding upstream 247012 9193199 ~ 9193429 (-)
G121912 NA non-coding downstream 806 8932163 ~ 8933163 (-)
G121885 NA non-coding downstream 63271 8868645 ~ 8870698 (-)
G121875 NA non-coding downstream 74966 8825431 ~ 8859003 (-)
G121789 NA non-coding downstream 916894 8016064 ~ 8017075 (-)
G121754 NA non-coding downstream 1088653 7830193 ~ 7845316 (-)
G121935 NA non-coding upstream 71939 9018126 ~ 9018327 (-)
G122019 NA non-coding upstream 192260 9138447 ~ 9213429 (-)
G122037 NA non-coding upstream 337782 9283969 ~ 9287587 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding upstream 674841 9621028 ~ 9621472 (-)
G122131 NA non-coding upstream 902048 9848235 ~ 9851376 (-)
AMCG00002223 NA other downstream 1094558 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 2918576 5975725 ~ 6015393 (-)
G120993 NA other downstream 4714092 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5147425 3784236 ~ 3786544 (-)
G120907 NA other downstream 5217717 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 662563 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 811238 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 884332 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 890731 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 1323702 10269889 ~ 10279984 (-)

Expression


Co-expression Network