AMCG00002250


Basic Information

Item Value
gene id AMCG00002250
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9055314 ~ 9061095 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002250
cagagggaaagtgggggtggagggagactgtgtgtctgtgtgtaggcATGTGTGTGCTTAGCTCAAAGGGGAGGGCACAAATGTAAAGATATTTAAGATGCTACAACAGGTCCACTCTGAAGAgactttgcagagcttgcaaAAACAGCTGGTCCCAAGGATTGTCCAGAGTTCCAGAGGCACGGACAGAAGACTTCACTACTGCAACCATactagatttgtattttaattattttaaatataaaaaaaatatatataaagctctTAGAAGGGCCCACGTATATCAAAAGAGTTAAACTATTTAGAAATAGTTAGAAATATTTAGAAATAGAATACATAtatctctttttttaaaaacttgatcaaaaacagaagagaaaagaaatcAGAAATGCTGGGGAGCGTGATGTTAAGGCTGGTGATGCTGGGAGTGATGCTGGTGCTGGCGCTGCCGGGGGAGACTGGTGCACAGGCAATGAAGAAGCAGCAGCGCAGGATGACCCCCCCCCGGCCCAACCCCAAGCAGGGGTGCTGCGACGAAGTCAAGCTGCTCAAGGTGAAGGTGGCCAACCTGACCAGCATGCTGGCTGAGCTCACCAAGAAGCAGGAGACCGACTGGCTCAACATGATGGTGCAGATGATGGAGCTGGAGAACAGCAACCGGCAGCACGAGGGCCGCATTGTGGGAGCCGAGGGGAAGTACTCGGAGATCAACAACCGGCTGGACATCATGCAGTTGCAGGCCGCCCAGTCTGTCACTCAGACCTCTGCAGATGCGATCTATGACTGCGCGTCTTTGTACAGCAGGAATTACAAAATCTCCGGAGTGTACAAAATGCCAGCAGATGAATTCCTGGGAACACCTGAACTTGAAGTATATTGTGACATGGAGTCGAACGGTGGGGGCTGGACAGTCATCCAGAGGCGTAAGGTGGGCCTGACCTCTTTCAACCGGGACTGGAAGCAATATAAGGATGGCTTTGGCAACATCCGAGGGGATTTCTGGCTGGGGAACGCAAACATTTTCCGTCTCACCAGGCAGCCCAGCATTCTGAGGATAGAACTGGAGGACTGGGAAGGCGCCACCCGCTACGCAGAGTACAGTCATTTTTCCCTCAGCAACGAGGTAAATAGCTACAAGCTCTTCATCGCCAACTACAGTGGCAATGCAGGCCAGGACTCCCTGCGGTACCACAACAACACCAACTTCAGCACCAAGGACAAGGACAACGACAAGTGTGTGGACAACTGCGCCGATCGACGCAAAGGTGGTTACTGGTACAACTGCTGCACTGACTCCAACCTGAACGGTGTGTTCTATCGCTATGGGGAGCACACCAAGAACAGCGATGGCATCACCTGGTACGGTTGGCATGGGTCGAACTACTCCCTGAAACGGGTGGAGATGAAGATCCGTCCTCAAAATTTCCAATCTTAGAGACTGAGAGCGAAttgagcaaaaaaacaaaacaaaacagcccgTCTGACAGAACCTTAAAGAATCAAATGATGTCTGATTTTAATTGTGGAGAAAGTCTGTGGAGTccaaaaaaatgcaatgtgtaatatttgattgtaaaatgtagttttacttttctatttatctgttaaaagtatatattttattttatttccaatgaGCTCATCAGCAAAACTAATCTTTATCTGGATTATTGAGGTATGGGAGCAGTATCCCCATTTGACAAATTCAtgttagttaatttaatttgtcattagGGAGGGGGCCACAGGGGTGCCACAACTTCAAATTTTCTTGCctttcaataaaatgcaaagtatttaaagtaattttgtaataatgtatttgatttttgttgagtttttgttttctataaaatgCCCCTTTTGATTGATCTGTCTACCTATGTTTACCAAACGACAACATTCAATTTAATGTACTAAACAGTGTCTAATTCACATGTGTAACCATTTACAGACTGCCTATTGTAGCCATTATTTGCTCAAGCTAAAGGGAACAGCCACAAAAGGAGTATGATTTGAATTTAATGTGACATTTTGGAATTACTGCAAGATATTTTCAGTCGTAAAAATGTAGTACACTAATTGCATAGAGgcttaatatttgtttttgtactacAGAAAtcctgtgtaaaatgtaaaatgtgtacagCTTTATATGGCAATAttctattcaaataaataaaacattgtatttttaaacaca

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002250 True 2206 mRNA 0.43 5 9055314 9061095

Neighbor

gene id symbol gene type direction distance location
AMCG00002248 ubiad1 coding downstream 33043 9018607 ~ 9022271 (-)
AMCG00002252 mib2 coding downstream 49427 8995702 ~ 9005887 (-)
AMCG00002251 mib2 coding downstream 73170 8957110 ~ 8982144 (-)
AMCG00002249 mmp23b,LOC106572002 coding downstream 109127 8933969 ~ 8946187 (-)
AMCG00002247 NA coding downstream 151726 8898625 ~ 8903588 (-)
AMCG00002260 NA coding upstream 132104 9193199 ~ 9193429 (-)
AMCG00002259 NA coding upstream 139491 9200586 ~ 9208699 (-)
AMCG00002263 NA coding upstream 248321 9309416 ~ 9356970 (-)
AMCG00002271 NA coding upstream 567555 9628650 ~ 9629679 (-)
AMCG00002267 NA coding upstream 569035 9630130 ~ 9637266 (-)
G121935 NA non-coding downstream 36987 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 122151 8932163 ~ 8933163 (-)
G121885 NA non-coding downstream 184616 8868645 ~ 8870698 (-)
G121875 NA non-coding downstream 196311 8825431 ~ 8859003 (-)
G121789 NA non-coding downstream 1038239 8016064 ~ 8017075 (-)
G122019 NA non-coding upstream 77352 9138447 ~ 9213429 (-)
G122037 NA non-coding upstream 222874 9283969 ~ 9287587 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding upstream 559933 9621028 ~ 9621472 (-)
G122131 NA non-coding upstream 787140 9848235 ~ 9851376 (-)
G122226 NA non-coding upstream 1162118 10223213 ~ 10224982 (-)
AMCG00002223 NA other downstream 1215903 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3039921 5975725 ~ 6015393 (-)
G120993 NA other downstream 4835437 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5268770 3784236 ~ 3786544 (-)
G120907 NA other downstream 5339062 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 547655 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 696330 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 769424 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 775823 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 1208794 10269889 ~ 10279984 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035961 angptl7 coding NC_007119.7 CM002892.2 46217861 ~ 46221296 (+)
grasscarp (Ctenopharyngodon idella) CI01000050_07338022_07340567 ANGPTL7 coding CI01000050 null 7337445 ~ 7341011 (-)