AMCG00002251 (mib2)


Basic Information

Item Value
gene id AMCG00002251
gene name mib2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8957110 ~ 8982144 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002251
ATGGGAATAGGAAGTTCCTTTGCACAGAGGTCAGACCAGATCTTCACTATCAGGGTTACCTTGGTCCCGCGGCAGAACCTCTCCCGGATCATCTTGAAGGGCATATTCCAGGGTGTGAAGGTGGTGCGAGGGCCTGACTGGGACTGGGGCAACCAAGACGGGGGAGAAGGGAAGATTGGGAAGGTTGTGGATATCCGCGGATGGGACACGGAGTCGGGGCGCAGCGTGGCTAGTGTGACCTGGGCCAATGGCACCACCAACGTCTACAGAATGGGTCACAAAGGCAAGGTGGACCTAAAATACGTCTCTGACATAGCAGGGGGACATTACTACAAAGATCACCTTCCCAAACTAGGGGAGCACGCAGAACTGCAGAGACAGGAGAGTGCAGATGGACACACCTTCCAGCAAGGGGACAAGGTCAAGTGTCTTCTTGAGGTGGACATCCTCCGGCAGATGCAGGAGGGCCACGGAGGATGGAACCCTAAAATGGCTGAGTATATTTGCCGAATAGGGACTGTGCACAGGATCACTGACCGAGGGGATGTGAGGGTGCAATACAGCAATAACATCCGCTGGACATTTCACCCGGGGGCCTTGACTAAGATGTGCTTCCCCCTTCCCTCTGCCCAGGTAAACACATTCGGGGTGGGAGACCTGGTCCGCGTGCTGGACGACATGGACAATGTGAAGCGTCTGCAGGCCGGACATGGGGAGTGGACAGACAGCATGGCCCCTGCCCTGGGGCAGGTGGGTAAAGTGCTGAAAGTGTATGCGGACGGTGACCTGAGAGTGGCTTTTGGAGGCCAGACTTGGACCTTTAACCCTGCGTGCCTCACCGCTCAGCCTATCGAGATGGACGCCAACCTCATGACCACCGAAAACACCAATGAATCAGGAAGCACGGTCATCTCGGTGCTAGAGAAGCTGCTCTCACAGTCCACTGAGCAGGACAACCCCAGCCGGCTGGTGATCGAAGCCGCACATGGCAGTGCCAGCAAAGTCCAAGATCTAGTGCAGAAGTATCCAGAAAAGGTGGACATTAAGAATCAGGGCAAAACCGCATTGCAAGTGGCTGCTCATCAAGGTCACATGGAGGTTGTGAAAGTCCTGCTGCAGGCCAACAGCAACATCGAGGTGAAGGATGAGGATGGAGACACTGCGCTGCATTACACAGCTTTTGGGAACCAGGCTGAGATTGCGCGACTGCTGCTTAGCAAAGGTGCCAACGTGAACCTGCTGAACAACTCCATGTGCACGGCCCTGCACATCGCCGTCAACAAGGGCTTCACCGAGGTGGTGAGGGTTCTGTCGGAGCATAACGCTGACGTCAACCTGCAGGACTCCTATGGAGACACGCCTCTTCACGACGCCATTGCAAAAGACTTCAGGAACATCATTGAGATCCTCACAGAGGTGCCCAACATCGACTTCACCCAGCAAAACAACAGAGGCTTCAACCTGTTGCACCACGCTGCACTGAAGGGCAACAAGCTAGCGACTGAAAAGATCCTGGCACGAGCTCGGCAGCTAGTGGACGTGAAGAAGGAAGATGGCTTCTCAGCCCTGCACCTGGCGGCCCTCAACAACCACCGAGACGTGGCTGAGATTCTCCTCAAAGAGGGCCGCTGTGATGTCAACATCAGGAACAACAGGAACCAGACGCCCCTGCAGCTGGCCGTGACGCAGGGCCATGCGGAGATGGTGCAGCTGGTGGTGACGGAGGGGGCCGACGTCAACGTGGAGGACGAGGACGGAGACACGGCCATGCATACTGCGCTCGGACGGCAGCAGCTCGCCACCACCATGGCCACCACCGAGGGGGAGGGCTCCTCGCTGTACACACGGCTGCATGGCTCAGGCCTGCTGGGGAGCACAGAGCTCAATGTGGGCGCTGCCATAGCCTGCTTCCTGGCTCAGGAGGGCGCAGACATCAGTTATGCCAACCACAAAGGGAAGAGCCCCCTGGACCTGGTGACCGACGGCACAATCGTGCAGCTCATTAAGAGCTTTTCCGAGAAACACAGGACACAGCAGCTCCAGGGAAACAGCTGTGGCACtggcatcagcagcagcagtctgCGGCGCGTCCACACCACCCCCAACACCATGACCAACCTGGCCATGCCAACCTCCACAGGACCCAGCGAATGCCTCATCTGCTCAGAGCTGGCCCTGCTCATCCTCTTCTCCCCCTGTCAGCACAGCGTGGCCTGCGAGGAGTGTGCTCACCGCATGAAAAAGTGCATCAAATGCCAGGTTACAATTACGAAGAAACTCCGCCAAGACAACACGGAGGTGGAGTGCAGCCCCAGCTCGGAGAACTCGGAGCAACACAACCTGCTGGAGCAGCTGCAGTCGCGCTACCGGCAGATGGAGGAGCGAATCACCTGCCCCATCTGCATTGACAACCACATCAAGCTGGTGTTCCAGTGCGGCCACGCCTCCTGCATCGACTGCAGCGCCGCCCTGAAGACCTGCCCCATCTGCCGGCAGACCATCCGCGAGCGCATCCAGCTGTTCGTGTGA

Function

symbol description
mib2 Enables identical protein binding activity. Contributes to ubiquitin-protein transferase activity. Acts upstream of or within several processes, including melanocyte differentiation; protein autoubiquitination; and regulation of receptor internalization. Located in cytoplasmic vesicle and perinuclear region of cytoplasm. Is expressed in inner ear; mesenchyme pectoral fin; and pectoral fin. Orthologous to human MIB2 (MIB E3 ubiquitin protein ligase 2).

NR:

description
E3 ubiquitin-protein ligase MIB2 isoform X4

GO: NA

KEGG:

id description
K10645 MIB; E3 ubiquitin-protein ligase mind-bomb

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002251 True 2529 mRNA 0.58 17 8957110 8982144

Neighbor

gene id symbol gene type direction distance location
AMCG00002249 mmp23b,LOC106572002 coding downstream 10923 8933969 ~ 8946187 (-)
AMCG00002247 NA coding downstream 53522 8898625 ~ 8903588 (-)
AMCG00002240 calml6 coding downstream 143519 8810319 ~ 8813591 (-)
AMCG00002239 gabrd,LOC107690714,LOC107711789,LOC107684467 coding downstream 236993 8712465 ~ 8720117 (-)
AMCG00002238 NA coding downstream 248173 8706529 ~ 8708937 (-)
AMCG00002252 mib2 coding upstream 13558 8995702 ~ 9005887 (-)
AMCG00002248 ubiad1 coding upstream 36463 9018607 ~ 9022271 (-)
AMCG00002250 NA coding upstream 73170 9055314 ~ 9061095 (-)
AMCG00002260 NA coding upstream 211055 9193199 ~ 9193429 (-)
AMCG00002259 NA coding upstream 218442 9200586 ~ 9208699 (-)
G121912 NA non-coding downstream 23947 8932163 ~ 8933163 (-)
G121885 NA non-coding downstream 86412 8868645 ~ 8870698 (-)
G121875 NA non-coding downstream 98107 8825431 ~ 8859003 (-)
G121789 NA non-coding downstream 940035 8016064 ~ 8017075 (-)
G121754 NA non-coding downstream 1111794 7830193 ~ 7845316 (-)
G121935 NA non-coding upstream 35982 9018126 ~ 9018327 (-)
G122019 NA non-coding upstream 156303 9138447 ~ 9213429 (-)
G122037 NA non-coding upstream 301825 9283969 ~ 9287587 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding upstream 638884 9621028 ~ 9621472 (-)
G122131 NA non-coding upstream 866091 9848235 ~ 9851376 (-)
AMCG00002223 NA other downstream 1117699 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 2941717 5975725 ~ 6015393 (-)
G120993 NA other downstream 4737233 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5170566 3784236 ~ 3786544 (-)
G120907 NA other downstream 5240858 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 626606 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 775281 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 848375 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 854774 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 1287745 10269889 ~ 10279984 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036825 mib2 coding NC_007119.7 CM002892.2 53862745 ~ 53896982 (-)
grasscarp (Ctenopharyngodon idella) CI01000050_00851621_00899726 MIB2 coding CI01000050 null 851526 ~ 901164 (+)