AMCG00002252 (mib2)


Basic Information

Item Value
gene id AMCG00002252
gene name mib2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8995702 ~ 9005887 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002252
ATGgTGCCCCTGAGCTGTACCCAGAGACATCACTCGCTCACTCTCCTTCCTGTCCcgccaacccccccacccccctttcccGTCGGGGTGTTAACTGAGGTGCGAGTCAAGCCGGGATCCCCCCGCCCCTCCCTGCGTGCCAGGATGGAGGTTGGTATGAGAGTGGTGCGCGGCATGGACTGGAAGTGGGGTAACCAGGATGATGGGGAGGGTCACGTGGGCACAGTGGTGGAGATCGGACGGCAGGGCAGCACCACCACCCCCGACAAGACCGTGGTAGTTCAGTGGGACAGTGGCACCCGGACGAACTACCGCACGGGCTACCAGGGCGCCTACGACCTCCTGCTGTATGACAACGCACAGATCGGTGTTCGGCACTCCAACATCATCTGTGACAGCTGCAAGAAGCACGGGATCATGGGAATGCGGTGGAAGTGTAAGGTCTGCTTCGACTATGACCTGTGCACGCAGTGTTACATGAACAACAAGCACGACCTGGCGCACGCCTTTGAACGCTACGAGACTGCTCACTCCCAGCCGTGA

Function

symbol description
mib2 Enables identical protein binding activity. Contributes to ubiquitin-protein transferase activity. Acts upstream of or within several processes, including melanocyte differentiation; protein autoubiquitination; and regulation of receptor internalization. Located in cytoplasmic vesicle and perinuclear region of cytoplasm. Is expressed in inner ear; mesenchyme pectoral fin; and pectoral fin. Orthologous to human MIB2 (MIB E3 ubiquitin protein ligase 2).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MIB2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002252 True 543 mRNA 0.61 3 8995702 9005887

Neighbor

gene id symbol gene type direction distance location
AMCG00002251 mib2 coding downstream 13558 8957110 ~ 8982144 (-)
AMCG00002249 mmp23b,LOC106572002 coding downstream 49515 8933969 ~ 8946187 (-)
AMCG00002247 NA coding downstream 92114 8898625 ~ 8903588 (-)
AMCG00002240 calml6 coding downstream 182111 8810319 ~ 8813591 (-)
AMCG00002239 gabrd,LOC107690714,LOC107711789,LOC107684467 coding downstream 275585 8712465 ~ 8720117 (-)
AMCG00002248 ubiad1 coding upstream 12720 9018607 ~ 9022271 (-)
AMCG00002250 NA coding upstream 49427 9055314 ~ 9061095 (-)
AMCG00002260 NA coding upstream 187312 9193199 ~ 9193429 (-)
AMCG00002259 NA coding upstream 194699 9200586 ~ 9208699 (-)
AMCG00002263 NA coding upstream 303529 9309416 ~ 9356970 (-)
G121912 NA non-coding downstream 62539 8932163 ~ 8933163 (-)
G121885 NA non-coding downstream 125004 8868645 ~ 8870698 (-)
G121875 NA non-coding downstream 136699 8825431 ~ 8859003 (-)
G121789 NA non-coding downstream 978627 8016064 ~ 8017075 (-)
G121754 NA non-coding downstream 1150386 7830193 ~ 7845316 (-)
G121935 NA non-coding upstream 12239 9018126 ~ 9018327 (-)
G122019 NA non-coding upstream 132560 9138447 ~ 9213429 (-)
G122037 NA non-coding upstream 278082 9283969 ~ 9287587 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding upstream 615141 9621028 ~ 9621472 (-)
G122131 NA non-coding upstream 842348 9848235 ~ 9851376 (-)
AMCG00002223 NA other downstream 1156291 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 2980309 5975725 ~ 6015393 (-)
G120993 NA other downstream 4775825 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5209158 3784236 ~ 3786544 (-)
G120907 NA other downstream 5279450 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 602863 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 751538 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 824632 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 831031 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 1264002 10269889 ~ 10279984 (-)

Expression


Co-expression Network