AMCG00002256 (mtor,LOC107564227,LOC107727986)


Basic Information

Item Value
gene id AMCG00002256
gene name mtor,LOC107564227,LOC107727986
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9026743 ~ 9049195 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002256
ATGTCTGTTGTTGATGCTCAGGTGTGCCGCTGGGTGCTGAAGTATCGGACCAGTAAAAACCCTCTGATTCAGATGACCATTCTGAACCTGCTGCCGCGCCTGGCTGCCTTCCAGCCCCACACGTTCACAGATCAGTACTTGTCCGACACTATGGGCCACCTGCTGGGCTGCctgaagaaggagaaggaacGCACGGCAGCCTTCCAGGCGCTTGGCCTGCTCGTGGTGGCCGTGAGGACGGAGATCCAGCCCTACCTCACCAAGATCCTGGAGATCATCAAGGCTGCGCTGCCCCCCAAGGACTTCGCACACAAGAGGCAGAAGACCATTCAGGTGGATGCCACCGTGTTCACCTGTATCAGTATGCTTTCCCGTGCCATGGGGCCCACCATCCAGCAGGACATCAAGGAACTCCTGGAACCCATGCTGGCCGTGGGTCTCAGcccGGCACTGACCGCAGTTCTGTACGACCTGAGCCGGCAGATCCCCCAGTTGAAGAAGGATATCCAGGATGGGCTGCTGAAGATGCTCTCGCTGGTCCTCATGCACAAGCCCCTTCGTCACCCGGGCATGCCCAAGGGCCTAGCCCACCAACTGGCATCGCCCAGCCTCACCAACATCCCCGAGGCCAGCGACGTGGGCAGCATCACCCTGGCCCTGCGCACCCTGGGCAGCTTCGAGTTTGAAGgACACTCCCTCACACAGTTTGTGAGGCACTGCGCTGACCACTTCCTGAACAGCGAGCACAAGGAGATCCGCATGGAGGCAGCGCGCACCTGCTCACGCCTGCTCACGCCCTCCATCCAGCTGATCAGTGGCCACGGCCATGTGGTCAGCCAGACAGCCGTGCAGGTGGTGGCTGACGTACTGAGCAAACTGCTGGTCGTGGGAATCACCGACCCAGACCCTGATATCCGTTACTGTGTGCTGGCTTCACTGGACGAGCGATTCGACGCCCACCTAGCCCAGGCCGAGAACCTGCAGGCCCTGTTTGTGGCTCTGAACGACGAGGTGTTTGAGATCCGGGAACTGGCCATCTGCACCATTGGCCGGCTGTCCAGCATGAACCCGGCCTTCGTCATGCCCTTTCTGCGCAAGATGCTCATCCAGATCCTGACTGAGCTGGAGCACAGCGGGGTGGGCAGAAACAAGGAGCAGAGCGCCCGCATGTTGGGTCACCTGGTGTCCAATGCGCCGCGTCTCATTCGCCCCTACATGGAGCCCATCCTCAAGGCCCTCATTCTGAAGCTGAAAGACCCTGATCCCAATCCCGCAGTGGTCATCAGTGTCCTGGCTACCATTGGAGAGCTGGCCCAGGTCAGCGGGCTGGAGATGAGGAAGTGGATGGACGAGCTGTTCCCAATCATCATGGACATGCTGCAGGACTCCTCCTCCCTGGCCAAGAGACAGGTGGCACTGTGGACGCTGGGGCAGCAGGTGGCCAGCACTGGGTATGTGGTGGAGCCCTACCGCAAATACCCCTCCCTGCTGGAAGTCCTGCTCAACTTCCTCAAGACCGAACAGAACCAAGGAATCAGGAGAGAGGCCATTCGCGTTCTCGGACTTCTCGGCGCGCTGGACCCATACAAACACAAGGTGAACATCGGGATGATTGATCAGTCCAGGGATGCCTCTGCAGTCAGCCTCTCAGAGTCCAAATCCAGTCAGGATTCTGCGGACTACAGCACCAGTGAGATGCTCGTCAACATGGGGAACCTGCCCCTGGATGAGTTCTACCCAGCCGTTGCCATAGTCACCCTGATGCGCATCCTGAGGGACCCGTCGCTGTCCAATCACCACACCATGGTGGTCCAAGCCGTCACCTTCATCTTCAAGTCTCTTGGGCTTAAGTGTGTGCAGTTCCTTCCCCAGGTCATGCCGACTTTCCTCAATGTCATCCGAGTGTGCGATGCCAACATCCGGGAGtttttgttccaacagttGGGAATGCTGGTGTGCTTTGTGAAGATCCACATCAGACCGTATATGGACGATATCTTCACTCTCATCAGAGAGTACTGGACCCCGAACAACCCCATGCAGAACACCATCATCCTGCTGATCGAGCAGATTGTGGTGGCCTTGGGGGGTGAGTTCAAGCTCTACCTGCCCCAGCTCATCCCACACATGCTGAGGGTCTTCATGCATGACAACAGCCCGGGGCGCAGCGTCACCATCAAGTTGCTAAATGCCATTCAGCTGTTTGGTGCCAACCTGGACGATTATCTCCACCTACTGCTACCCCCCATTGTCAAGCTGTTTGATGCCCAAGATGTGCCTCCGCAAGCGCGCAAGGTGGCCCTGGAGACACTTGACCGACTCACGGAGTCTCTGGATTTCACCGACTACGCCTCCAGAATCATCCATCCCATTGTTCGCACGCTGGATGGAACTCCAGAACTACGCAACACATCCATGGACACCCTCTCCTCGTTAGTCTTCCAGCTGGGCAAAAAGTATCAGATCTTCATTCCCATGGTGAACAAGGTGATGCTGAAACACCGAATAAACCACCAGCGCTATGATGTTCTCATCTGCCGAATAGTCAAGGGCTACACCttggcagaggaggaggaggatccCCTGATATTTCAGCACCGCCAGCTGAGGAGTAATCAGGGAGACATGCTGGTCAGTGGGCCAGTGGAGACCGGGCCCATGAAGAAACTGCATGCGTGGGGGGCGGCTCGGAAGGTGTCGAAGGACGACTGGCTAGAGTGGCTGCGCCGGCTGAGCGTGGTGCTGCTCAAGGAGTCTTCATCCCCGGCCCTGCGCTCGTGCTGGTCCCTGGCTCAGACCTACATCCCCCTGGCCAGGGACCTGTTCAATGCTGCCTTCCTGTCATGCTGGTCTGAGCTGAGTGAGGACCAGCAGGACGAGCTCATCCGCAGCATCGAGCTGGCCCTCACCTCACAGGACATCGCCGAGGTCACCCAGACCCTCCTCAACTTGGCCGAGTTCATGGAGCACAGCGATAAGGGCCCCCTGCCGCTGAGAGATGACAACGGCATCGTCCTGCTGGGAGAGAGAGCGGCTAAGTGCCGAGCATACGCCAAGGCCCTGCACTACAAGGAGCTGGAGTTCCAGAAGGGAGCCTCACCCCTCATCCTGGAGTCCCTCATCAGGTGA

Function

symbol description
mtor Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including positive regulation of myelination; regulation of TOR signaling; and skin development. Predicted to be part of TORC1 complex and TORC2 complex. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; male organism; myotome; nervous system; and somite. Human ortholog(s) of this gene implicated in autosomal dominant polycystic kidney disease; kidney angiomyolipoma; lung disease (multiple); prostate cancer; and type 2 diabetes mellitus. Orthologous to human MTOR (mechanistic target of rapamycin kinase).

NR:

description
PREDICTED: serine/threonine-protein kinase mTOR isoform X1

GO:

id name namespace
GO:0043588 skin development biological_process
GO:0048565 digestive tract development biological_process
GO:0016310 phosphorylation biological_process
GO:0008144 drug binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002256 True 3129 mRNA 0.58 21 9026743 9049195

Neighbor

gene id symbol gene type direction distance location
AMCG00002257 mtor,LOC106941359 coding upstream 157 9024071 ~ 9026586 (+)
AMCG00002243 NA coding upstream 93617 8921914 ~ 8933126 (+)
AMCG00002242 NA coding upstream 110164 8906933 ~ 8916579 (+)
AMCG00002244 nadk coding upstream 132905 8873790 ~ 8893838 (+)
AMCG00002246 gnb1,LOC107385217,LOC104919476,LOC100703896,LOC108231344 coding upstream 158779 8859433 ~ 8867964 (+)
AMCG00002255 mtor,LOC107727986,LOC107564227 coding downstream 31319 9080514 ~ 9119066 (+)
AMCG00002254 NA coding downstream 71214 9120409 ~ 9129343 (+)
AMCG00002253 srm coding downstream 80810 9130005 ~ 9139454 (+)
AMCG00002261 cort coding downstream 102200 9151395 ~ 9152910 (+)
AMCG00002258 NA coding downstream 124775 9173970 ~ 9185563 (+)
G121862 NA non-coding upstream 210190 8816330 ~ 8816553 (+)
G121767 NA non-coding upstream 1073119 7945365 ~ 7953624 (+)
G121741 NA non-coding upstream 1109500 7910558 ~ 7917243 (+)
G121722 NA non-coding upstream 1192532 7829807 ~ 7834211 (+)
G121688 ski,LOC106572818 non-coding upstream 1378427 7646718 ~ 7648316 (+)
G121981 NA non-coding downstream 199122 9248317 ~ 9313334 (+)
G121999 NA non-coding downstream 493420 9542615 ~ 9562591 (+)
G122058 NA non-coding downstream 576049 9625244 ~ 9626221 (+)
G122063 NA non-coding downstream 579403 9628598 ~ 9628833 (+)
G122086 NA non-coding downstream 644521 9693716 ~ 9759061 (+)
AMCG00002245 NA other upstream 234265 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 1615513 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 2424135 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 3800087 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 5484566 3533814 ~ 3542177 (+)
AMCG00002272 NA other downstream 795010 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 1518717 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 1665604 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 2308357 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 2316419 11365614 ~ 11379568 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036709 mtor coding NC_007119.7 CM002892.2 46077609 ~ 46321918 (-)
grasscarp (Ctenopharyngodon idella) CI01000050_07250416_07306801 MTOR coding CI01000050 null 7250416 ~ 7306801 (+)