AMCG00002264 (tardbp,LOC107586522,LOC107716231,LOC107695779,LOC107570713,LOC107681961)


Basic Information

Item Value
gene id AMCG00002264
gene name tardbp,LOC107586522,LOC107716231,LOC107695779,LOC107570713,LOC107681961
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9619457 ~ 9624694 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002264
tttgttttgaagtttgGGAAGAAAGGAGTGGGGGGAAAGCGTTTgcgtggattttattttaaattataaaaggaACACATTTAGATCTATAGGTAGAAAACTTGCCACTGGGGCATCTTACGGGTGCACAGCATAATTTGTATTGGCTTGGAATTGATATTCGAGCTATTTACATCCGCACAGAGCGCGAATAACGAGCGATCATTCATTTTGCAAGCGTGGTCAGTCTGGGCCTTACATGGCCGACTACTCTCGCTgctgatcttttatttttaaacaaagcaatttgaGGTTCGGGCGGCATTGCCTTTGATTGATTTCGCATCTTCTCGTTTGCGAGCAAgttcatttagttttaaattcgTAAATTGCTACTAAACAGTTgacaaaaaagcaaagaaaaacaaaacaagtcacCCCTGGAAATCGTTAATTTGCAGAGGCGATACGTCTGTTCTTTTTCGGGGGGAAAGCGACACTAGAAGAAAAATGGCAGAGCTGTATATCCGAGTAGCGGAGGATGAGAATGAGGAGCCGATGGAGATCCCCTCCGAGGACGACGGCACCGTGTTGCTCTCCACCGTGGCGGCGCAGTTTCCCGGGGCCTGCGGCCTGCGTTACCGGAGCCCCGTGTCGCAGTGTATGCGAGGCGTCCGCTTAGTGGAGGGCATACTGCACGCCCCCGAGACGGGCTGGGGCAACTTGGTTTATGTGGTGAACTACCCTAAAGataacaaaaggaaaatggatGAGATTGATGCCTCTTCCGCTGTGAAAATAAAGAGGGGTGTTCAGAAGACCTCTGATTTGATTGTCCTGGGTTTACCCTGGAAGACATCTGAGCAGGACCTGAAGGACTACTTCAGCACCTTTGGGGAAGTGCTGATGGTGCAGGTTAAACGAGATGTTAAAACGGGCAACTCCAAGGGCTTTGGCTTTGTGAGATTCACAGAATATGAAACGCAAGTGAAAGTGATGTCCCAGCGGCACATGATCGATGGCAGATGGTGTGACTGCAAGCTACCTAACTCGAAGCAAAGCCCTGATGAGCCCCTGAGGAGCAGAAAAGTGTTTGTAGGTCGCTGCACTGAAGACATGACTGCTGAAGAGCTCCGACAGTTCTTCATGCAGTACGGAGAGGTCACAGATGTCTTCATCCCCAAGCCTTTTCGGGCTTTTGCGTTCGTCACTTTCGCAGATGACCAGGTGGCCCAGTCCCTGTGCGGAGAGGACCTCATCATTAAGGGAGTCAGCGTGCACATCTCCAATGCTGAGCCTAAGCACAATAATAGTAGGCAAATGATGGAACGGGGGGGGAGATTTGGGAATGGCGGGTTTGGGGGTCAGGGGTTTGGTAGTAGTCGCAGTGGGCTTGGCAACAGTGCCAACAATAGCATGGGCAGCGGCATGAATTTCGGAGCCTTTAGTATTAACCCAGCCATGATGGCCGCTGCCCAGGCTGCTTTGCAGAGCAGCTGGGGGATGATGGGGATGCTCGCAAGCCAGCAAGGCCAGTCTGGGGCCTCGGGTACGACTCCCACTGGGCAGACTAGTGTCACCAGGGAGCAGACCCAGACTTTCGCTTCTGGAAACAACAATTATGGCACCAGTTCAGCCAGTTTAGGATGGGGCACAGGCTCAAACTCTGGCACGAGCACTGGGTTTAATTCAGGATTCGGCTCCAGTATGGAGTCGAAATCATCAGGGTGGGGAATGTAGAAAATTTGATTTTGAAGGGGGTTCACGTTTCTAGATTGTATGGTAAGTATTTTGAAAGATATGATTTTCCAGATCCATTTCTAATGTCCTGggtatttaaattacatactatttttttgcctttctttttgtaaaagAAGCAACCTGaatgtttttgtacatttgacTAAATCTGCAAAAGATTGATGTACAGAGTGGTTGAAAGTGAATCACTGTTTACCAGGAAGGTAAACTACAACACTAtgtgtagtgtttattttgtttttgttttatttcctggtAAAATTAAGTATATGGCAAACCAGATTCTCTATGCATGCATTGTAAATATTGAAAGttcaagaacaaacaaatgcatggaTATTTTCATCCCTTTTAATTAGATCAACCCGATCAACCACaattaatattgatttccatttattttgtattgagagAATCTggttttaagttttgtttgcAAAAGTTCTTTTAAAGTTTTACGGAAAAGCCTTCATTAAAATCTCTCTGCAGTTCATCTCTTTTCCAATTTCCCCGGAAGAAGCCCTTCGTTGGCAGCAATGTTCGAGCGATCTCAGTATCAGTTCCCTTCTTCCCATGTGTAAATGCTTTGTCATCAAAGAACACAGCTTCACTCTGCATATACTGTGTTAGACGGGACCTCGGATTTGGAGTGAACTTACCCCCCTTCCACATCGCTGAGGCAGGTCTGCATCTGGACCAGGAAGATGTCATTTTTCTGAAGACTGAAGACCCAGGCCAGTGGAGTGTGGGTGGTCCCAAATCATTCTAACACTGGGACAGCAGCTGAATGCTTCAGATCTGAAACAATGGGCTGCCTTCACTTAACCAGACGTTGGGAACTCGtctttatcaatttatttttcttaaatggaCATTTATAAACTAGGGAGAGAGGGATTTGCTTATGCATaaccataaaatatatatatatgaattatacaAATCTGGGTAAGTAAGTCTGCAAGAATCTACAACCTTGGCCAATTTGAACATCTTTGAAGAACCCTTGTATTTTGATGCATGATTTCTGTACAACTTCAGAttcacccccaccacccttGTCCCACCCCACAAGTGACTGGCttttgaaagcaaagcaaagtgttttattttcaatcttcTGTTTCGAGAATCCTCAACGATTAGAATTCTTCTGGCGTACTCGTGACACGGGAAGAGCGAGAGGACTGCTTTCATTCACTTGCTTTACGAGAATCATTTGTGTTGTTAAATACTGTGACCTGCAATGGCTTTTTatgtaatggttttgttttttgttgtaattaaacaCTAacgttaaaaaacaaaaaaaacaatggccttactagaaaatatttttttttaaagaaatgatcTGTCACCTTGCTTTTGAGGAATGTGTGGTTTAAGCTATGAACACCCTCCATCACAAACCAAATGGTAGCTGGTAATGTAAAATGGCATAAAATAAGACTTGATCTTGGGAGAATATCGAAAGGAATATTGTTAATAATGTTAGCGTTGGTGATTTGTATTTCACTCAGTGAGGCTTAAGGGGTGGGCTAAAAGGGTGCTGTCCACGTTGGGGAAGGGGTATTTTAGACCACATTCTTTTGCCCTTAGGACTTGAATCCCTTATGTATTATAAATTTTgtccaatattttttttttttttttttttttttgtt

Function

symbol description
tardbp Enables double-stranded DNA binding activity; identical protein binding activity; and mRNA 3'-UTR binding activity. Involved in several processes, including negative regulation by host of viral transcription; nuclear inner membrane organization; and regulation of mRNA stability. Located in nucleoplasm. Implicated in Parkinson's disease; amyotrophic lateral sclerosis; amyotrophic lateral sclerosis type 10; and motor neuron disease. Biomarker of Lewy body dementia; neurodegenerative disease (multiple); and progressive supranuclear palsy.

NR:

description
PREDICTED: TAR DNA-binding protein 43 isoform X2

GO: NA

KEGG:

id description
K23600 TARDBP, TDP43; TAR DNA-binding protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002264 True 3410 mRNA 0.43 6 9619457 9624694

Neighbor

gene id symbol gene type direction distance location
AMCG00002262 NA coding upstream 335024 9253274 ~ 9284433 (+)
AMCG00002258 NA coding upstream 433894 9173970 ~ 9185563 (+)
AMCG00002261 cort coding upstream 466547 9151395 ~ 9152910 (+)
AMCG00002253 srm coding upstream 480003 9130005 ~ 9139454 (+)
AMCG00002254 NA coding upstream 490114 9120409 ~ 9129343 (+)
AMCG00002266 NA coding downstream 30039 9654733 ~ 9655758 (+)
AMCG00002274 lzic,LOC107708836,LOC107586557,LOC107718820,LOC107681991,LOC107695771 coding downstream 228856 9853550 ~ 9863089 (+)
AMCG00002273 NA coding downstream 248653 9873347 ~ 9874094 (+)
AMCG00002278 clstn1 coding downstream 326312 9951006 ~ 9971665 (+)
AMCG00002287 NA coding downstream 676613 10301307 ~ 10304361 (+)
G121999 NA non-coding upstream 56866 9542615 ~ 9562591 (+)
G121981 NA non-coding upstream 306123 9248317 ~ 9313334 (+)
G121862 NA non-coding upstream 802904 8816330 ~ 8816553 (+)
G121767 NA non-coding upstream 1665833 7945365 ~ 7953624 (+)
G121741 NA non-coding upstream 1702214 7910558 ~ 7917243 (+)
G122058 NA non-coding downstream 550 9625244 ~ 9626221 (+)
G122063 NA non-coding downstream 3904 9628598 ~ 9628833 (+)
G122086 NA non-coding downstream 69022 9693716 ~ 9759061 (+)
G122119 NA non-coding downstream 205060 9829754 ~ 9830678 (+)
G122126 ctnnbip1 non-coding downstream 238262 9862956 ~ 9898880 (+)
AMCG00002245 NA other upstream 826979 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 2208227 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 3016849 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 4392801 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 6077280 3533814 ~ 3542177 (+)
AMCG00002272 NA other downstream 219511 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 943218 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 1090105 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 1732858 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 1740920 11365614 ~ 11379568 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11656975_11660666 TARDBPL, TARDBP coding CI01000001 null 11656029 ~ 11661866 (+)
rainbow trout (Oncorhynchus mykiss) G260792 NA non-coding NC_048567.1 CM023221.2 43250342 ~ 43250568 (-)
striped catfish (Pangasianodon hypophthalmus) c16h1orf127 c15h1orf127,tardbp,LOC107570713 misc NC_047610.1 CM018556.1 7249631 ~ 7323946 (-)