AMCG00002267


Basic Information

Item Value
gene id AMCG00002267
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9630130 ~ 9637266 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002267
CGGAACTGTTGTAACCCCAGTATGTACAATAGTTTGTTAGTGTTTTTACGTACATGGCAAACGATACATTGGTGCAAATGGATGTTTCAGATGAACAAAGTGAATTCACTCATACACAGAAGCTGAAAGCTGCGGTGCACTACACTGTCGGGCAACTTTGTAAAGAAGTAGAGGAAGAGAACCAAGTGCACTTCAGCAAACAAGTTATCGCAGCCATTGCGGAGACCACATTCAGACAGTGTGatatttttgcAAAAGATCTTGAGGCATTTGCAAGGCATGCAAAGAGAACCACAGTGAACACGGAAGATGTCAAACTTGCAGCGAGAAGGAGCAAAGCACTGTCCAGTTACATCACAAAGAAGAGCGAGGAACTGATCTCCAGTAACCAGGAACAGAAGGAGAAAAGGAAGAAGAATGCAGGGAAAGGGAAGAAAAGCAGCGAGGCTTAGGTGGAAACACATCTGGCATTGGAGCTCTCAAGTAACTACACTTCTATCATAAAATAGGCATTTAGATTAGGCCCAATAAAATTCCcataaaaaattatacattccACAGCCACACCTCTTTCCTTAGCTGTGTCTGAAATGGACTAACAGGTGGTGTGTATTAATGAATGTTAAATTGATTCTAACAAAGACTTCTGTAGCAAACAGTTTGTTGCTTTGTTACATTTTCCTACATTACTATTTACAATTATTGTGATTACTTCATGATACTTTTTAAGAGTTTTGCTTATTTAAGGTCCTTGTACCCTGTTACAGTGTGAGAGGTGATGGTGGCTGTGGTATGACAGACTCAGACATGACTatggtaaatatataaattaaagaaaagcattagCTTCTAATAATAAACCAATACTTATATTTGCAGCACAAAGAGAACATTTCTGTGGCATGTAGTATGGAAATGGTACTCAGTGCACTTAGCAtagggttgttgttttgtgtttttcctaatgtgttaatgtttcactctttatgtaaataaatgttactttGCTTGGCATTTCTATTTATGCCTACGGTTTAATTACttagcaaaaaagaaaaagacaacataaacgcatttatgtaattaaaagcatttgagGCAGGAAtatgcactttatttacaataattgcTGATATCCTGAAGAGGGTGCATTAAAACGGATTAGATTATAATAGGGCCTTGGAGGAAAAACTGAAGGGAGCAGTGCGCTgccctgtgtttgtgtcagtaCGGGTGCTGGGTGTCGGACAGATGAAGCTGGAAAGGTTACTGTCCCTCTCAGTTACAGGGAAGGAGGCTGTTCAATAATGCAGGAAGTAACAGCTGATGAGAGCTGTATACAATGAACCCTGCTCTGGAGTTTACATTTTAGCTCCCAAAAGAGCAACTATCTACCAAAGTTAATGGCTGTAATTGTAAGTGGATGGAAATTCACAGTATTTATGCAAATCTTGTTACTCTTCTCTGTGCCATCAGCTCATTCTGATTCATCCATATTTCAGCATATCAATTGCAATTTGCTTGAGGTCTTGGACTGCAGTAGCTTGTGTTTTTCTGCATGCAAAACCCTTCTCTAAGTGTTTCTGTAcatgcattatatttaattcCAGGCTCTGACTGACCCATGCAAGTGATTAAATGATTTGTTCATCTTTCAACTGCCTAACATGTCAGGCTATGGCAGGGTGTAGTGTCTGAGTTTCGCTAACTAACCCTCCTGATGAGATCAAGAGCTGTAACCCTTCAGCTCAGTGGTCCCCAACCTGTCTACTGACCGATCCTGAAGCCTTACAGAGTAGATCTTCAGACAACTTGgcagcaaaacaacaacttgcAAATCCCCACCCACGCTCAACAGTGTAGAACGCAAGACTTGTGTTAAACATAAAATAGCTCTTCTTCTTGGTGACCGCTGCTTTAGATATATTGGACAGTACATCACTTAGGCAATCAGAATTCACTGGGTGGTACTACAGTTAGCCTAATATCTCCACAGTATGTGCTGTATTTTACATACAACAATCCACCTGAATAGTGAACTGCTGCATTGGCAAGCTAACTTGAATAAGCCATTCCTTTTGTTTATCTTGTTCTAGCACCCCAGTGGTATGTATTTTGTCACtctcttaaataaattaataaattaaagttgtctgataatacaatatcaaaa

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11511 APITD1, CENPS, MHF1; centromere protein S

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002267 True 2173 mRNA 0.39 5 9630130 9637266

Neighbor

gene id symbol gene type direction distance location
AMCG00002271 NA coding downstream 451 9628650 ~ 9629679 (-)
AMCG00002263 NA coding downstream 273160 9309416 ~ 9356970 (-)
AMCG00002259 NA coding downstream 421431 9200586 ~ 9208699 (-)
AMCG00002260 NA coding downstream 436701 9193199 ~ 9193429 (-)
AMCG00002250 NA coding downstream 569035 9055314 ~ 9061095 (-)
AMCG00002270 pgd,LOC107716232,LOC107681986 coding upstream 5980 9643246 ~ 9650610 (-)
AMCG00002269 kif1b coding upstream 24242 9661508 ~ 9692975 (-)
AMCG00002268 NA coding upstream 56494 9693760 ~ 9725266 (-)
AMCG00002277 NA coding upstream 165042 9802308 ~ 9807298 (-)
AMCG00002280 NA coding upstream 340510 9977776 ~ 10006571 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 8658 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 342543 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 416701 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 611803 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 696967 8932163 ~ 8933163 (-)
G122131 NA non-coding upstream 210969 9848235 ~ 9851376 (-)
G122226 NA non-coding upstream 585947 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 1113145 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 1174920 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1630298 11267564 ~ 11274527 (-)
AMCG00002265 NA other downstream 10003 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 1790719 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3614737 5975725 ~ 6015393 (-)
G120993 NA other downstream 5410253 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5843586 3784236 ~ 3786544 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 120159 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 193253 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 199652 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 632623 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 1200538 10837804 ~ 10847201 (-)

Expression


Co-expression Network