AMCG00002268


Basic Information

Item Value
gene id AMCG00002268
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9693760 ~ 9725266 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002268
agGAATGAAGGCAACAAAATACCTGCCCAGCTACACATTTAGTTGGTAAAGAGAGATGACATGTTTATGTGTTCGTGGCTGCAGACATGAATGGAGGCTCTGAATATTGTATGTTAAACTGAATGGGTTTCTGTTCCTACAATAAACTaacatcttttctttttacccCTCTCTCTAAAGCTATTGTGAACCCCAAAAACCCAAAGGAACCAGCCAAATCCTTCAGTTTCGACTATTCCTACTGGTCTCACACCTCGGTAGAGGACCCATGCTTTGCCTCGCAGTGTCTGGTGTACAATGACATCGGGAAGGAGATGCTGCAGCATGCCTTCGAAGGCTACAATGTCTGCATATTCGCCTATGGTCAGACCGGGGCGGGAAAGTCCTACACCATGATGGGCAAGCAGGAGGATGGCCAGGAGGGCATCATCCCAATGCTCTGTGAGGATCTCTTTGAGAAAATCAACGACAACAGCAAAGAGGAAATCTCGTACTCCGTGGAGGTCAGCTACATGGAAATCTAttgtgagagagtgagggatTTGCTGAACCCCAAAAATAAAGGCAACCTGCGTGTCCGTGAGCACCCTCTCCTCGGGCCCTACGTGGAAGACCTTTCCAAGTTGGCGGTCACATCCTACACTGACATCGCAGACCTCATGGATGCAGGAAATAAAGCCAGGACTGTGGCAGCGACAAACATGAATGAGACGAGCAGCAGGTCCCACGCCGTGTTCACTATCGTCTTCACGCAGCGGAAGCACGACAGTGAGACAGACCTCTCCACAGAGAAGGTCAGCAAAATCAGCCTGGTGGATCTGGCAGGCAGTGAAAGAGCTGACTCCACGGgAAGGCGCAAATATCAACAAATCTTTGACGACGCTGGGGAAAGTCATCTCTGCTCTGGCCGAAGTTGTGGGAACTCCAGAACCGCTATGGTGGCTGCACTCAGTCCTGCAGATATCAACTATGATGAAACGCTCAGCACCTTAAGATATGCAGACCGGGCCAAACAGATCAAGTGCAATGCTGTCATCAATGAAGACCCCAACGCCAAGCTGGTGCGGGAACTGAAGGAGGAAGTCACACGACTGAAGGACCTTCTGCGTGCGCAGGGCCTGGGagacatcctggacagtaagtgtggggatggggggggagCACAGAACAAGCCAGCGCTGCTGCACAACAAACGCCAACACAGCCAGGCAGGCTTGCAGTCTGTCTCCAGCATTCAGGAGCGTATTATGTCCACTCCGGGAGGAGAAGAGGCCATCGAACGGCTCAAGGAATCAGAGAAGATCATTGCGGAGCTCAATGAGACCTGGGAGGAAAAACTGCGGAAGACAGAAGCAATCCGAATGGAAAGAGAGGCTCTCCTGGCTGAGATGGGTGTGGCAATACGAGAAGACGGGGGGACCCTGGGGGTTTTCTCTCCCAAAAAGACGCCGCACCTGGTGAACTTAAATGAAGATCCTCTGATGTCAGAATGTCTGCTTTATTATATCAAGGATGGGATTACAAGGGTTGGCCAGGCCGACGCCGAGAGACGTCAGGATATTGTTCTGAGTGGGGCGCACATCAAAGAAGAGCACTGCATCTTCAGGAGCGAGAGGAATGCCAACGGGGATGCCCTGCGAGGGGCGCGCGCTGAGCGGGAGAAGACCCCGTCTGCTGAGACGCCCTCGGAACCCGTGGACTGGACCTTTGCCCAGAGGGAGCTGCTAGAGAAGCAGGGCATCGATATGAAGCAGGAGATGGAGAAGAGacTTACAGAGATGGAGATCCTTTATaagaaggagaaagaggaggcCGATCAGCTTCTGGAGCAGCAGAGACTGgATGGAGATTCTGATAGTGGCGATGATTCAGACAAGAGGTCTTGCGAAGAGAGCTGGAGACTAATTACCTCCTTGAGAGAAAAGCTGCCTCCCAGCAAACTGCAAACCATTGTCAAAAAGTGCGGCCTCCCCAGCAGTGGGAAAAAGCGTGAGCCTATAAAAATGTACCAGATCCCCCAGCGCCGGCGCATCACCAAGGACTCCAAGTGGGTCACCATCTCAGACCTCAAGATCCAGGCTGTGAAGGAGATCTGTTACGAAGTGGCTCTCAACGACTTCAGGCACTCCAGGCAGGAAATCGAGGCCCTGGCCATCGTCAAGATGAAGGAGCTGTGCGCCATGTACAGCAAGAAGGACCCCAATGAGCGGGACTCATGGCGCGCCGTGGCGAGGGACGTGTGGGACACCGTGGGCGTGGGGGATGAGCGCATCGAGGACGTGATGACCAATGGGCGGGGCGTCACTGATATGGATGACCTGAAGGTGCACATCGACAAGCTGGAGGACATCCTGCAGGAGGTGAAGAAGCAGAACAACATGAAGGATGAAGAGATCCGTGCACTGAGGAACAAGATGGTCAAAATGGAACGGGTGTTGCCCCTGATCAGCTCCCCAGAGAAGCAGCAGCAGGCAGTGGCCGGCGGAAAGAATGAACTGAGCCACGGcaaggaggagaaagagggtGAGGAAAAGGAGGTGCGTGTGTCCAAGATCATGGGTGAGGACCCTTCTTTTCGCCGGGGCCGCATGCACTGGATGAAGCAGGAGCAGCTGCGCCTCAAGAACCTGCAGCAGCAGGAGATCTCCAAGCAGCTGCGTCGGCAGAGCGGGCCGCACCGCTTCATTCCGCCCGAGGACCGCAAGCTCCGCTTCCCCTTCAAGAGCAACCCAAAGCACCGCAACTCCTGGAGCCCCGGCACGCACATCATCATCACCGACGAGCAGGTCATAGAGCTGAAGGTGCCCAAGGAGGCAGTGGAAGAGGAGAATGGGGATGCTGTCATAGAGGACGAGACCAAGGATCAGAAGCCCAGCGGTGCCCTCCAGGCCAACTCACCGCTGACCGGCACAGCCTCACACGGCAACACGATGGAGCACGACCCCAGCCAGGGCTACATGCAGCACAGCTACAgggtccagcagcagcagcagcaaggcCGCTGGCGCAGCAATTCCGTCAACAGCAGTCAGCAGCGCGGCCTCCAGCACCAGGCGTCGTCTGGCTCCGCCGAGTCTTTGCAGTCCTTGGAGGGGAGGCAGACCCCCCCACACCACAGCTTTCAGCAGCCGAGATACTacaatcagcagcagcagcagcagcagcacccaCAGCACCAGCACCGTCAGCCTTACTACTACAACAGCCCTTACAATGATGCCAGCTTAGCTGGTTTTCAGCACTACACCCAAACTGATCGACCTGGCAATTACAATAACTTTATTGCCCCTCCCCGAATGCGCCGCCAGCTTTCCGCGCCCAACCTCAAAGCCGGCCAGGAAACGACGGTGTGAAACATGACCATGGCAGCGGAGGACAAAGGGATGCGATCCAGAGAAATTAGTCAATGTCACAGCAATaacgaaacaaaaaacataacgACTGCTACAACTATAATTTCTCCTTTTGCACTTCAGCTGAGTGTGTTTGATTATTGGTTGATCCAAACTGAAttacatatgtattaaacaaaaagcacaatttaTATGTTAACGTAGTCCAAACCTTATCCTTTTCTTAGTTCTGCTACACTGGCTGTATTAGTGACTTCAGAGATCATGtagactgtttttgtttttttaaagaaatgattGGGCCTTTTTAGAAAACCACATCCATGCCTTGTTTTGTGATTCAaacaacatttctttttttttttttttttgcattcatgtTTAGAAACATCTAACCCCTAAAGGGGATAGTTCCTTATTCTTTAATATAACtgagaattatttttttcatttatttttgtgccttAATTATAAGTCATGTACtaatcaaaatatgtttttaagcaGGATGAATACATCTATGTAAAGCTCTAGGGAAAATACTCTGGATCTGAAGGGGGGGGGGCATATTTTTTAGAACAGCTGCattatttcatgatttatttgacaaatttaaattaatttcaacagGCACAAAAATATTACCCAATGCTGAAatgatgatgaaaaaaaaaaaaacttgatttaGAAGTGgtattttctaaatatgtttGGATGTCTTCAAGTAAAATGGGCTTTTATGTGTTCCTAGTGGGCTTTATGTAAGTGTGAAGAGGTCAGAGGAAAGTGCTAGAAAGTGACGAGGATGTCTGGTTGCAGAGAATCAGTGCCTTATTGATTTGCTAACACAAATCCATTAACATAATTCTGCATTCAGGTTCAGCTAGAATATTAAATGCCTCTCTTTGCAGTCTTCCTTCCCCTCCTTTCCTTTTCCTCTATTCTCTGTGGAATGCCACACCTAACAGTGGGCACTCTCTGACCCAGCCTTTGTGATCCATAACCCCAGagaatgcttttcattttggtgGATGCTTGGCAAGTTTTGACCCCCTATATACGATGCCAATTGAATACAGACGCAACAGAATCAGAGGTCAGGCATGAGTTCGTTTGTTTCAAAGATTGACGTGACAATGAAATCTGAACTTTGTAACGCAAGTAAATGATGGCAACAAATTATGGCATCTTCCCCCTTTCATTGCAGGTCTGGGATTTAGCCCCTTGAGCGAGTGGTGTGCCTGTGCGTGCACTTAATAGATTGCATCAAACCCCCAAGATCTTTTTTTCACCCAATAAGATTAGCTTTGAATTAACTTGACCTCCTTCACCTCGGCTCccttctttgttgttgttgtattctGGTGTGTAGGCATCCCGCAATCGGAGACCATCAGTCTGTCGAAGGATTCAGCTcacatttactttcatttatACAGCCATTTTAGCAACTGTGATCTACAGTACCTGTGCATCTCCTTCATTTGTGACTGGATTGCCGAGCCATGGGAGCAGCACAGACTCCTGTAGAGTGGGGCTTGTGACAAAGAGCTTATTTCTGAGCATTACATTTTGGTATGCGTCAGCTGAACTCCGAAACAGGGGTCATGTGGACCCAATTAGATACCTAtgcttttgttaattttttcaTTGGTTGCAGTGTTTagcactgaaattaattaagtgCAATGCTTCGGGAATATCTGCTCAGTCTtggcccccccaaaaaaagcaaACCTGGAACAGCTCAGTCTGCAAAAGCAGAAGGCGTGCCGTTTCCATGGCTACACGGTCTGTGTtccagtgcagtgtgtgacGGACGAGTCTCCCCGAGTCTGCAAGATTAGCCTCCGGTTTGTTTCCTGGGATGGAGTTTTCTTGGTTACCTCACAATGTCGAAGTTTCCAAGAAAGGAAGTTAAACATGAGGTTGCCATGgttttaaaataccaattcTAAAGgctttaaaagagagagagagagagagagtgtatttttctgaaaatctgtgttgtttattatttctctttaagcagtattttacattacaaccAATTCCCAGATACTTATCTGAACAATCAGTACACATTGGGTCTTTCCTTCCCTGTTCCATGGTTTATAGATTGCAAAGATAGATAACAATACCAAGCATCTCGACTGATTGTCTGACTTTACTTTAATCTGTATTGCAGACGTTTTCCTCCTTTTTAGAATCTGATCAGCAGTCTCTGTTACATTGTTCACCAAATGCATTTTTGGAGCTTGTATCTTCACACTGCGGAGAAATATATGTTAAACGGATCCAATTCTGAAGGCACAAGGATTGCATGTTGGGAGTGTGTTTTTATAGATCTGTGGGaggacaaaaaaactaaatggttGCAGTTTTCATCATTTACATCTTCAGTGTAACTCAAACCCAGTAGCAGTAACACCTTTGAAGTTCGCATCAGCCAGTTACTCGAAAACAGAACTGCTGCTTTGTTTCAGTATAATGCCAATGTGCCCATTCTAACACCTGCCTGCATgccttttttcaatttttattttctaaatatgcCTTTAGTATACCTCTATTACTCCATTACACATTGGAATATTTAACTGTATGTTATGGTGCTAACAGCTTACTTGCACGCAGTCTGAAATAAGCTGTATAAAATGAAACCTGGACAATGGTTAGCGAGttctttttgaatatatatgtgaGGAAAAATGGTCTTCATTGTACATGTACTTGTTCAATGTTGTACATTTgtggtataaaaacaaaaagaagagaagaacacttaaaatatatttcttagaaATATCAAGTGCTCCCGCAGGGCTTTACATCAGCCTGTCGGGAGCCAGGTGAGTATTCTGTATCACAAGACGACTCGATTGTTCAATAGgactttgctgttgtttttgttgttgtttgtttctttttattgttttttgtttgttttttt

Function

GO:

id name namespace
GO:0008298 intracellular mRNA localization biological_process
GO:0048917 posterior lateral line ganglion development biological_process
GO:0048918 posterior lateral line nerve development biological_process
GO:0048675 axon extension biological_process
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10392 KIF1; kinesin family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002268 True 6309 mRNA 0.47 18 9693760 9725266

Neighbor

gene id symbol gene type direction distance location
AMCG00002269 kif1b coding downstream 785 9661508 ~ 9692975 (-)
AMCG00002270 pgd,LOC107716232,LOC107681986 coding downstream 43150 9643246 ~ 9650610 (-)
AMCG00002267 NA coding downstream 56494 9630130 ~ 9637266 (-)
AMCG00002271 NA coding downstream 64081 9628650 ~ 9629679 (-)
AMCG00002263 NA coding downstream 336790 9309416 ~ 9356970 (-)
AMCG00002277 NA coding upstream 77042 9802308 ~ 9807298 (-)
AMCG00002280 NA coding upstream 252510 9977776 ~ 10006571 (-)
AMCG00002286 NA coding upstream 299153 10024419 ~ 10030406 (-)
AMCG00002285 NA coding upstream 341646 10066912 ~ 10076666 (-)
AMCG00002283 slc25a33,LOC107708828 coding upstream 353891 10079157 ~ 10093103 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 72288 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 406173 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 480331 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 675433 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 760597 8932163 ~ 8933163 (-)
G122131 NA non-coding upstream 122969 9848235 ~ 9851376 (-)
G122226 NA non-coding upstream 497947 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 1025145 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 1086920 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1542298 11267564 ~ 11274527 (-)
AMCG00002265 NA other downstream 73633 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 1854349 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3678367 5975725 ~ 6015393 (-)
G120993 NA other downstream 5473883 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5907216 3784236 ~ 3786544 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 32159 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 105253 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 111652 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 544623 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 1112538 10837804 ~ 10847201 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11715436_11736738 KIF1B coding CI01000001 null 11715112 ~ 11736738 (-)