AMCG00002276


Basic Information

Item Value
gene id AMCG00002276
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9830519 ~ 9833224 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002276
ATGCCCGCGAACTTCGGTGGTACCTGGGAGATGGTGAGCAATGTCAACTTGGAAGGCTACATGCTGGCGCTCGGTATTGACCCCACCATCCGCAAGAGTGCATTGAAGCTGAAACACAAGAAGGTGGTGGTGCAGAAGGGCAATTACTTCATGGTGAAAACAATGAGCCCCTTCAGGAATTACACCTTTGATTTCTGTGTGGGCGAGGAGTTCGAGGAGCACACCAAAGGGCTGGACAATCGGAAGTGCAAGTTGAAgtga
>TU153137
CTGTGAGGTGTGCAGCACTCGGGACACGGTCACAAAACACTCAGGCTTGTGTGACAGTTACACAGTGCTCgcccctcacctactgctgctTTGTGCGTTGATTTACTTGGGTTAGCAGTTCCTCCTCACTGTCACCATGCCCGCGAACTTCGGTGGTACCTGGGAGATGGTGAGCAATGTCAACTTGGAAGGCTACATGCTGGCGCTCGGTATTGACCCCACCATCCGCAAGAGTGCATTGAAGCTGAAACACAAGAAGGTGGTGGTGCAGAAGGGCAATTACTTCATGGTGAAAACAATGAGCCCCTTCAGGAATTACACCTTTGATTTCTGTGTGGGCGAGGAGTTCGAGGAGCACACCAAAGGGCTGGACAATCGGAAGTGCAAGTCTCTAGTGACATAGGAGAGTGACCACCTGGTGTGTGTGCAGAAAGGCGAGAAGAAGGATCGGGGTTGGATACACTGGATACAGGATGACAAACTGTACCTGG

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002276 False 261 mRNA 0.51 3 9830519 9833088
TU153137 True 491 TUCP 0.52 3 9831911 9833224

Neighbor

gene id symbol gene type direction distance location
AMCG00002277 NA coding downstream 23221 9802308 ~ 9807298 (-)
AMCG00002268 NA coding downstream 105253 9693760 ~ 9725266 (-)
AMCG00002269 kif1b coding downstream 137544 9661508 ~ 9692975 (-)
AMCG00002270 pgd,LOC107716232,LOC107681986 coding downstream 179909 9643246 ~ 9650610 (-)
AMCG00002267 NA coding downstream 193253 9630130 ~ 9637266 (-)
AMCG00002280 NA coding upstream 144552 9977776 ~ 10006571 (-)
AMCG00002286 NA coding upstream 191195 10024419 ~ 10030406 (-)
AMCG00002285 NA coding upstream 233688 10066912 ~ 10076666 (-)
AMCG00002283 slc25a33,LOC107708828 coding upstream 245933 10079157 ~ 10093103 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding upstream 356539 10189763 ~ 10197544 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 209047 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 542932 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 617090 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 812192 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 897356 8932163 ~ 8933163 (-)
G122131 NA non-coding upstream 15011 9848235 ~ 9851376 (-)
G122226 NA non-coding upstream 389989 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 917187 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 978962 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1434340 11267564 ~ 11274527 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 29411 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 210392 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 1991108 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3815126 5975725 ~ 6015393 (-)
G120993 NA other downstream 5610642 4214715 ~ 4219877 (-)
AMCG00002279 NA other upstream 3694 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 436665 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 1004580 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1680776 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1814687 11647911 ~ 11685089 (-)

Expression


Co-expression Network