AMCG00002279


Basic Information

Item Value
gene id AMCG00002279
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9836918 ~ 9853075 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002279
ATGGAATTCCTTCTAGAAACACGAAACGAGGCGGTCCAGCAGAAACATGCCTTTTGTGTTTCCTCAAGAGGCGGGTTTACTGTCCGAGCTGCAGCCCTGGTTGTGGTGGTCGGGTCTGATGTGATGGAGAACCGAGCCGACAGGACCAAAGTGGTGCTCCTGGCCTGCGGGTCCTTCAACCCCACCACGCACATGCACCTGCGGATGTTCGAGCTGGCGCGGGATCACCTGCAGCACAGTGGTAATTACAAAGTTGTAAAAGGCATAATTTCCCCGGTTGGCGACAGTTACAAGAAGAAGGGCCTGATTGAAGCCCACCACCGAATTGCCATGGCTACCCTCGCCACAGAGAGCTCTGACTGGCTGAAGGTGGACCCCTGGGAGGGAGAGCAGGCAGAGTGGGTGGAGACAGCAAAGGTGATCAGGCACCACCAGGAGGAGCTGTATACAGGGGAAGTTTCAAAGTGTGAAGACGAAGTAGACACTGTGAAAATCGGCAGGAAACGGCGGTGGGAGAGCAGAGAGGGAGTGCCTGTGAAGCAGGAGTCCCAGCCCACGAAGATTGTGGGGAAGTATGGCTTGGTGTGCATCACGAGGCAAGGCTACGATGTGGAGAAGTTTATTTACCAGTCTGATATCCTCTGGAAGTACAGGAACAACAATCACCTTGTGACGGTGTGCATGTCCAATGAAATCTCCAGCACTGGGGTCAGGAGAGCCCTGAGACGAGGGCTAAGCGTGAAGTACCATGTGCCTGATCCAGTGGTGGACTACATTCACAGCCACCATCTGTACAGTCCAGAGAGCAAGgacaaaaacacagatataaTCTTGGCACCATTACAGAGATGCACTGAAACCAATCCAGACTGTAACTAA
>TU153139
CACAGATTTGCcgtttattaaatgtataacttggtactgatttaaaaatatatacattccttacctttattttattttgttggcttTGTCGGAGCAGTTTTGATTATTTGTTGTCACTGGTAAGGGGGAGGAGTAAGACGTTACACCAACTTCCGGTCCATTCTGACCAATCACAATGCAGCTGGTGTCTTTTTCGGTGTAACACGAATGTAACTCGACCTGAAGACAACAACTGAAATTGACACGTCGTTAAAatccTGCATTAGTTTACTGTCCGAGCTGCAGCCCTGGTTGTGGTGGTCGGGTCTGATGTGATGGAGAACCGAGCCGACAGGACCAAAGTGGTGCTCCTGGCCTGCGGGTCCTTCAACCCCACCACGCACATGCACCTGCGGATGTTCGAGCTGGCGCGGGATCACCTGCAGCACAGTGGTAATTACAAAGTTGTAAAAGGCATAATTTCCCCGGTTGGCGACAGTTACAAGAAGAAGGGCCTGATTGAAGCCCACCACCGAATTGCCATGGCTACCCTCGCCACAGAGAGCTCTGACTGGCTGAAGGTGGACCCCTGGGAGGGAGAGCAGGCAGAGTGGGTGGAGACAGCAAAGGTGATCAGGCACCACCAGGAGGAGCTGTATACAGGGGAAGTTTCAAAGTGTGAAGACGAAGTAGACACTGTGAAAATCGGCAGGAAACGGCGGTGGGAGAGCAGAGAGGGAGTGCCTGTGAAGCAGGAGTCCCAGCCCACGAGTAATG

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K06210 NMNAT; nicotinamide mononucleotide adenylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002279 True 879 mRNA 0.53 5 9836918 9844326
TU153139 False 756 TUCP 0.50 4 9842095 9853075

Neighbor

gene id symbol gene type direction distance location
AMCG00002277 NA coding downstream 29620 9802308 ~ 9807298 (-)
AMCG00002268 NA coding downstream 111652 9693760 ~ 9725266 (-)
AMCG00002269 kif1b coding downstream 143943 9661508 ~ 9692975 (-)
AMCG00002270 pgd,LOC107716232,LOC107681986 coding downstream 186308 9643246 ~ 9650610 (-)
AMCG00002267 NA coding downstream 199652 9630130 ~ 9637266 (-)
AMCG00002280 NA coding upstream 124701 9977776 ~ 10006571 (-)
AMCG00002286 NA coding upstream 171344 10024419 ~ 10030406 (-)
AMCG00002285 NA coding upstream 213837 10066912 ~ 10076666 (-)
AMCG00002283 slc25a33,LOC107708828 coding upstream 226082 10079157 ~ 10093103 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding upstream 336688 10189763 ~ 10197544 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 215446 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 549331 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 623489 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 818591 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 903755 8932163 ~ 8933163 (-)
G122226 NA non-coding upstream 370138 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 897336 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 959111 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1414489 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1554449 11407524 ~ 11409586 (-)
AMCG00002276 NA other downstream 3694 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 35810 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 216791 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 1997507 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3821525 5975725 ~ 6015393 (-)
AMCG00002288 NA other upstream 416814 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 984729 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1660925 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1794836 11647911 ~ 11685089 (-)
G122597 NA other upstream 1878542 11731617 ~ 11734324 (-)

Expression


Co-expression Network