AMCG00002280


Basic Information

Item Value
gene id AMCG00002280
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9977776 ~ 10006571 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002280
GCTGTGTGCGGAGTGCAGTGCAGAGGCAGGCGGGTCGCAGTTGTGCAGCTCACATCCTCTGCCAAGACATTAAATGCGGTTGCTGCCAAGTTCGTCGTGTGATAAAAAACTGGTATTAGAAACTCAACAGTCCCGGGCATTAAGGAAATAGTTGGAGAGGAGGAGCAGGCGGGGTGGACATCTTTCGGTTGGGAAAAGCGGATCTTGTAATTACTGCATGCACAACAGGAACGGCAGCCGGTACTTGCAATGCAATGATGGCTAAATGGGACGAGCTGTAAGAGCAACCATTTGCGAGAACAGCAGGGCTGGCTGTAGATGAGCAGTATCCACGATGCCCCCAGGTGTGTACTGCATGCAGGATATCTGGGCAGAAGAGCAGAGCCCGGAGATCATAGTCGACTTCCTCTTGCCAACTGGGATCTACCTGAGCTTCTCTGTGGCCCGTAATGCTACCATTGGAGCCATCAAAAAGTATGTGTGGAAGCAGGCCAAAGCGGAGCCTCTATTCCATGCCCTCAACGACCCCGACGCCTACGTCTTCACGTGCATCAACCACACAGCTgagcaggaggagctggaggatgAGCAGCGGAGGCTGTGCGACGTCCGGCCCTTCTTGCCCATCCTGCGACTGGTGGCGCGAGAGGGGGACCGTGTGGTGAAGCTCATCAACACTCAGATCAGCCTCCTCATAGGCAAAGGTCTGCACGAGTTTGACTCTCTGAAGAACCACGAGGTCGACGAGTTCCGTTCCAAGATAAGCTCCTTCTGCGAGGAGAAGGCTTTGGATCGGCAGATGCTGTCCTGGCAGAAGTGGATGGAGTGTAACTTCCCATGTGAGCTGGAGCCTTGCCCCACGCTGCCGGAGACGGGCAGCCTGAAGTCTCGCAGCAGCAAGAAGCTCATCGTCAATGTCAAGTTCGAATCCAGTGAAGAGAGCTTCACATTTCAGGTTCAACCCCAAGACATTCCCTTAACTCTAATGCAGTCCGCTCTGAAGAAGAAAGCCACGGTCTTCCGACAaatcaaacaggaaaaaatcGAAGATTATACCCTGCAAGTGAACGGGAGGAGTGAatatatttatggaaaataCCCCCTGAGTCAATTCAAATACATCTGTTCCTGTCTGCACAATGGTTTGACTCCTCACTTGACAATGGTGCATTGCTCAACAGTCAGTAAAATGCAGGATGAACAAGGGGGTTTCATCATGCAGGTTTCCAAAAGCCGAACGTCTTCCAAACCGCCTCCATTACCCCTCAAAAAGCAAACCATTTCATCATTGTGGACTATAAAGGAGCCATTCTATATACACCTCATGCAGGGCAGCCGGGTAAATGCAGGTGAAGGAATGAAGCTCGTTGTTCAGGCTGGTCTCTTCCACGGCAGTGAGATGCTGTGTAAGACAGTGACCAGCAATGAGGTGAACGTCTGCTCGGAGCCCCTCTGGGAGCAGAAGCTGGAGTTTGACATCAACATCAATGACCTTCCGCGTATGACCCGCCTCTGCTTCGCACTGTACGCGGTCATCGAGAAGACCAAAAAGCCCCGGTCCACCAAGAAGAAGCACAAGAAGGCTGACTGTCCTTTGGCCTGGGTGAACACCACAGTGTTTGACTATAAGGAACAGCTGAAGACAGGGGATGTTTCCCTTTATACCTGGCCCTCCGTTCCAGatGATAAGGGTGACCTGCTAAGCCCCATGGGTACTGTGGAGTGTAACCCCAACACGGACAGCACTGCTGCACTGATAATTCGCTTCCCGAACATTCGACCCCATCCCATTTATTATCCTTCCTTTGAAAAGATCATAGATTTGGGGAAAAATGGCAAAATGGCAGTGGCGACAAAGGAGGAGTACAAGAAACTGTGCGAAATATTGGAAAACAAGAACTACACAGAGTTCTTCGAGGATGACAAAGAGGTTCTGTGGAAGCTGCGTGATGCGGTCCGATCCAGGTTTCCTGAGAGCCTGGCGAAGCTATTACTCATAACGAAGTGGAACAAGCACGAAGATGTGGCACAGATGATATGTCTCCTGCAGGCATGGCCAGACCTCCCTGCAATCCATGCGCTAGAGCTGCTGGACTACAGCTTTCCTGATCGCAACGTGAGGTCGTTCACCATTAGATGTTTAAGAAAGCTGAGtgaCAATGAACTGTTCCAGTATTTGCTACAACTGGTACAAGTGCTGAAGTACGAGTCTTACTTAGACTGTGATTTGACACGATTTCTGCTAGAAAGAGCTCTGGCCAATAGAAAAATAGGACACTTCTTGTTTTGGCATCTCAGGTCAGAAATGCATGTTCCCTCCGTGGCTTTGAGATTTGGTCTTATTCTTGAGGCCTATTGTCGGGGAACAACTAACCATATGAAAATTTTAATGAGGCAGAACGAAGCCctgaacaaaatgaaatctCTAAACGACTTTGTAAAATCCAGCTCTATGAAGACCTCAAAACAGCAAACCAGAGAGACCATGGCGCTGTACATGAAGCAGGAGACGTACATAGAAGCCATGTCTGATCTCACCTCCCCTCTCAACCCCAGTGTTATCCTCTCTAATATCTGtccAGAGAGATGCAAGTTCATGGACTCCAAGATGAAGCCGCTGTGGCTTGTCTACAGCAACGAGAAGGTGCCAGGAAATAATGTGGGCATTATCTTCAAAAACGGAGATGATCTCCGACAAGATATGTTGACTCTACAGATGATACAGCTCATGGACGTGCTATGGAAGAAGGAGGGTCTGGATTTGagGATGATTCCGTATGGCTGTCTTTCCACTGGAGACAAGACGGGCCTGATTGAAGTGGTCCGGAGCTCTGACACTATCGCCAACATCCAGCTCAACAAAAGCAACATGGCCGCCACAGCTGCCTTCAACAAGGACGCGTTGCTCAACTGGATAAAGTCCAAAAACCCCGGGGATAAACTGGAACAGGCCATAGAGGAGTTCACCCTGTCCTGCGCTGGCTACTGTGTAGCTACGTATGTTTTAGGAATCGGAGATCGACACAGCGACAACATAATGATCAGGGAGACCGGCCAGctGTTCCACATTGACTTTGGACACTTTCTCGGGAACTTCAAAAGCAAGTTTGGCATCAATCGGGAGCGCGTGCCTTTCATCTTAACATACGACTTTGTGCACGTGATTCAGCAAGGACGCACCAACAACAGCGAGAAGTTTGAGAGGTTTCGCGATTACTGTGAGCAAGCTTACAAGATCCTGTGTAGGAACGGGACCCTGTTTGTAAATCTTTTTGCACTGATGAGGGCGGCAGGTCTACCTGAGCTCAGCTCCTCCAAGGACATACAGTACCTGAAGGATTCTTTAGCCCTGGGCAAGACGGAAGAGGAGGCccttaaacatttcaaagtgaaatTTAATGAAGCACTGCGGGAAAGCTGGAAAACCAAAGTGAACTGGATGGCTCATAATGTAGCCAAAGATAACAGATAAAGACTTGCGGCCAAGGCccgtgggggtggggggggttgg

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002280 True 3511 mRNA 0.50 23 9977776 10006571

Neighbor

gene id symbol gene type direction distance location
AMCG00002277 NA coding downstream 170478 9802308 ~ 9807298 (-)
AMCG00002268 NA coding downstream 252510 9693760 ~ 9725266 (-)
AMCG00002269 kif1b coding downstream 284801 9661508 ~ 9692975 (-)
AMCG00002270 pgd,LOC107716232,LOC107681986 coding downstream 327166 9643246 ~ 9650610 (-)
AMCG00002267 NA coding downstream 340510 9630130 ~ 9637266 (-)
AMCG00002286 NA coding upstream 17848 10024419 ~ 10030406 (-)
AMCG00002285 NA coding upstream 60341 10066912 ~ 10076666 (-)
AMCG00002283 slc25a33,LOC107708828 coding upstream 72586 10079157 ~ 10093103 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding upstream 183192 10189763 ~ 10197544 (-)
AMCG00002281 NA coding upstream 218717 10225288 ~ 10239533 (-)
G122131 NA non-coding downstream 126400 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 356304 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 690189 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 764347 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 959449 9018126 ~ 9018327 (-)
G122226 NA non-coding upstream 216642 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 743840 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 805615 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1260993 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1400953 11407524 ~ 11409586 (-)
AMCG00002279 NA other downstream 124701 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 144552 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 176668 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 357649 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 2138365 7826641 ~ 7839411 (-)
AMCG00002288 NA other upstream 263318 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 831233 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1507429 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1641340 11647911 ~ 11685089 (-)
G122597 NA other upstream 1725046 11731617 ~ 11734324 (-)

Expression


Co-expression Network