AMCG00002281


Basic Information

Item Value
gene id AMCG00002281
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10225288 ~ 10239533 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002281
GGAAGCAGCCTCCCGCTCACAGCCAGGCATGTCACTACGGCCAGCGTCGCAGGGTGGACAGGAGTTTGGCTTGCCCTGTGGAAGATGAACCTCTGGAAGGCTGTGGTGAGTGGTCTCCTGCTTTTGGGGGCCCTGTGTGTAGAGCAAGGCTGGGCGACAGAGGCAGAGGGCACCAGGGAAGCTAAGGGGCACATATCTGTCGTGATCGTGGGTGGAACTGGAGACCTGGCCAAGAAGTACTTGTGGCAGGGCTTCTTCCAGCTGTACTCAGAGCAGGTCAGCAGCGGCCACACCTTCTCCTTCTATGCCGCCGCCCTGCCAGACGCAGACAAGGGTGAGCCAGCACTGTTCGACATTCTGAAGCGCTTGCGGTGCCCGGCCCAGGTTTCCCCCGAGAGGTGCGCCCTGCTTAGGGACCAGTTCCTCAAGCTGTCTCAGTACCACCAAGCGAAAACTGAGGAGCACTACAGCAAACTGAATGCAGAGATCGGGCAGCGGCTGCAGCAGGAGGGGCTGAGGGAAACTGGACGGCTTTTTTACCTGTCCGTGCCTGCCTTCGCATATGCCGGCATCGCCGCCAAGATCAACAGCAGCTGCCGGCCGCCTGCTGGCGCCTGGCTTagagtggtcctggagaagccCTTTGGCCATGACTACGACAGTGCCCAGCTGCTCTCCACAGAGCTGGAGAAGTTcctgaaggaggaggagatgtACAGGAGCGATCACTACCTGGGCAAGCAGgttgtTTCCCAGATCCTGACATTTAGGAACGAGAACAGAAAGTTTCTGGACCCCATATGGAATAAGCATCATATCGAGAGGGTGGAAATAGTGCTGAAGGAAACTCTGGATGCTAAAGGCCGCACTCAGTTCTACGACCAATACGGCGTCATTCGCGATGTCATTCAGAACCACCTGACAGAGATCCTCTCGCTGGTGGCCATGGTGCTTCCCAGAGACACAAGGAGGTCCAGCGAGGTCCTGAGGAACAAGCTGGCCGTCTTTAGCTCCCTGCAGAGGCTGGACCGGGCCAGCGCCATCATCGCTCAGTACCGGGCCTACAGCTCCGAGGTGCGGGAGGAGCTCAACAAGACCAAGGAACATATGAGCCTGACGCCCACGTTCGCTGGGGTTGTGGTGCACCTTGATAGTCCCCAGTTCGAGGGCGTCCCTTTCATACTGACCTCAGGGAAGATGCTGGACGAGAGGGTGGGGTATGCCCGGGTGCTCTTCAAGAACCAGGTCTTCTGCGTTCAGAACATGGACAGCCTCCACTGCAAGCCGCGACAGATTGTCTTTTACTTCGGCCACGGCAGCCTTCAGTATCCTGCTATCTTGGTGAGCAAGAACCTATTCAAGCCGGCTGTGCTGGGCAGCGGCTGGAAGGAGGTCACCGAGTACAAGAACGTCAGCCTGTTCGGCCTGCTGCTGTCCGAATACCACGTCCAGACCCCCGTGGTGCAGCTAGAGGCCTACGATGTGCTGATCTCCAACATATTTCATGCCAAGAAGGACAGTTTCATCAGCACCGAGAACCTGCTGGCATCCTGGAGCTTTTGGACCCCCTTGCTAAACAGCTTGGCGCAGGAGTTCCCGCGGCTGTACCCTGGAGGCCAGGACAACCAGAACCTCCTGGACTTCCAGCTCCAGGGGCGGGAGGTCTCCTTCGTCAATGAGGCCGTGGTGATTTCTGATGGTCACGGGGGGACTTCCCCTAACAGCTTCCAGGTCACGCAGGGGAAATACAGGACCTGGGACATGGTATCAGCCTGGGCTGAGGAGTTGGTCCAGAGGCTGGCCTCCGACCTGCAGGTGGTGGCCCAGGCAGCTGTTGAAGAAAGCGGTCAGTTCCACCTGGCGCTCTCAGGGGGGTCCAGCCCCTTGGCTCTGTTCCAGCGGCTGGTGTTGCACCACTACTCCTTTCCCTGGGACCGGACACATATCTGGATGGTGGACGAGCGCTGCGTGCCGCTGACAGAGCCGGGCTCCAACTTCAGGAACGTGCATGACCACCTCCTCCGCCATCTCCGCCTGCCATACTTCAACATCCACCCCATGCCTGTGCTCCTCAACCAGCGGCTGTGCGTGGAGGAGGACGGTGGCCCCCAGGTCTATGAGAAGGAGATCGCCCGCATCATCAACGGATCACGGTTTGACTTCGTGCTGCTGGGCGTCGGCTATGACGGCCACACAGCCTCTCTCTTCCAAGATACCAGGCCTGAGGTCCTGCAGGACAAGCTGGTGGCCCTGACAGAAAGCCCATTCAAACCCCACCAAAGAATGAGCCTCACCTTTTCTGCCATCAACAGGGCCAAGAACATAGGCGTGCTGGTGACCGGCAAAGGGAAGCACGAGATGATAAGCCAGCTCAGCAGGATGAAGGACTACTCTAAGAAGTGGCCCATAACTGGTGTCAATCCTGACAAGGGCAATCTAGTGTGGTACATTGATTATGAGGCTCTCCTGGGGTAGTCCACATGTATGCACTATACATTTAATGGTTTCATTGGTAAATTAAATTggtaattgtgttgtttttttcctatctTCCCATAAATATCTGGACCtttaattttggttttgttctacCCTGTAATCACAGATTGTAAAGTTGCATAGTGCTGGTGATTTACTAAAGTGCTATCAATATCTCACATTTCTAAAACCTTCTATAGAAGTATCattatatttctctttttttctttttgtgggggagagggaggggatttcaaattatatttacaacaacttgaatgtattgaatatacatttatttcaattccaGTTCCTACCAATGCGTGGACCACTACCATTAATGATCTTGAGAACCATGCTTTCTGGCTGACAGTCCCACCAGAATGACTTTGACTTTTAAAGCGCTAAACTATATTTATGTCCGTATCCACCTAGCAAATACCGCCAGATCCCCAACCTTTCTGTTTCAGGGTATAGGGAATTCCTTGCATTACTTTTTAAGTAGCATAGGTCCAATTTAtgtaacaaatacattcatTGTTATAGGCTACTCTTACATCTAGACACTCATGTTAAAGAGGGTGCTTTTCTGGACCACGTGTGTGCCTTGTTCTCATTCACTGTTTTtctaattttcattttgtcctaCTTGACTTGATAGACCAAAGGGGCAGATTGTTTACTGTAAAGTTCTACAGGGTGAGAGACAACTAGGAATTTCCCTTCTTTCTGTGtagtttcttcttttctttcagagctgatgttttcttttttattgtatgggtgtgtgtttttagtttagtttagtttagttttcttttgttttgttgtgtaggAATTGAAAAGGCATCATGTGATAGTAACTAGGAAAGACTATCGATATCGTTGATCAACTGCAGCCAGTGCTCAGGGATTCTAATGCAGCTGCATCAAGTGTCTCTGAATAATTACCACAGTGATGCACACTCCTGGCCCTGGAGAGCCACGGCCCTGCAAGAACCTTAAAATCCTCATCTGAAGACCTGGAAAAAGTGGTAATCTAGCCTTATTCAGTTACTAATTGATGATGTTAATTagttaagagctcaggtggaatgacaACCAGAAGACATTGTTGCTCTGCAGGGCAAGGGGTGTTGCATCGCTTAGAGACAAAAGTGCCTTTTTAggtttaagaatatatttacaaatacagaaatactaAGTCCGCCTATGCTTTTCTTGAATGTATGAGTTCTGTATGAATTTGTGGGAATATAAGCCTCAGGTTATTAAAATGTGAAGGGGAAGCCCTGTACTACCTCCAAGTTAAAGCATAATTTTCTCTGGGTTTGCaaattaaaactacacaactCATTTCTGTAAATCTGCTGAGAAGTAGAACTGCAAACCTGTGGTTTGACTTGGCCAAATAAAaccttgttttttctctgtcacA

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0017057 6-phosphogluconolactonase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0004345 glucose-6-phosphate dehydrogenase activity molecular_function

KEGG:

id description
K13937 H6PD; hexose-6-phosphate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002281 True 3916 mRNA 0.50 5 10225288 10239533

Neighbor

gene id symbol gene type direction distance location
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding downstream 27744 10189763 ~ 10197544 (-)
AMCG00002283 slc25a33,LOC107708828 coding downstream 132185 10079157 ~ 10093103 (-)
AMCG00002285 NA coding downstream 148622 10066912 ~ 10076666 (-)
AMCG00002286 NA coding downstream 194882 10024419 ~ 10030406 (-)
AMCG00002280 NA coding downstream 218717 9977776 ~ 10006571 (-)
AMCG00002284 NA coding upstream 559 10240092 ~ 10244785 (-)
AMCG00002292 NA coding upstream 152193 10391726 ~ 10403880 (-)
AMCG00002302 NA coding upstream 516299 10755832 ~ 10789955 (-)
AMCG00002303 NA coding upstream 687335 10926868 ~ 10929003 (-)
AMCG00002313 NA coding upstream 1038893 11278426 ~ 11279133 (-)
G122226 NA non-coding downstream 306 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 373912 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 603816 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 937701 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 1011859 9138447 ~ 9213429 (-)
G122302 NA non-coding upstream 510878 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 572653 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1028031 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1167991 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 1210033 11449566 ~ 11449791 (-)
AMCG00002279 NA other downstream 372213 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 392064 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 424180 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 605161 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 2385877 7826641 ~ 7839411 (-)
AMCG00002288 NA other upstream 30356 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 598271 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1274467 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1408378 11647911 ~ 11685089 (-)
G122597 NA other upstream 1492084 11731617 ~ 11734324 (-)

Expression


Co-expression Network