AMCG00002282 (spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472)


Basic Information

Item Value
gene id AMCG00002282
gene name spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10189763 ~ 10197544 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002282
ttttcttttttttttttttcctctctctttttaaaaggGGTGGTGAGCCGCACACGGAATATGGGCCAAAAGGTTCCTGGAGGGATAAAGACCGTTGACATGAGGGACCCGGCATTTAGGCCTCTAAAACTGGAGCTGCAGGCCCTCGATTACACTAAGCCTGCTCGGCTGGACATGCTGCTGGACATGCCGTCCGTCTCCCACGATGTCCAAATCCAGCACTCGTGGAACAATGACGACCGGTCACTGAACATATTTGTCAAGGAGgacaacaaattaatatttcaccGGCATCCGGTGGCACAGAGCACGGATGGGATCCGAGGCAAGGTGGGCTACACCCGGGGACTGCACGTTTGGGAGATCAGCTGGGCGATGCGACAGAGGGGCACCCATGCGGTGGTTGGCGTGGCAACTGGTGACGCTCCCTTGCATTCTGTAGGATACACTGCACTCGTAGGAAATAACAGTGAATCCTGGGGCTGGGACCTCGGCAGGAATAAACTCTACTACGACGGCAAAAACCAGCCCAGTAAGACCTACCCGACTTTCTTGGAGCCGGACGAGACGTTCATCGTACCGGACTCGTTTTTAGTGGTTTTGGACATGGATGAAGGTACGCTCAGCTTCATTGTGGATGGACAGTATTTGGGAGTAGCTTTTAGGGGACTAAAGGGGAAGAAGCTGTACCCCGTCGTGAGCGCTGTCTGGGGACACTGTGAAATCAGAATCCGATACATTAATGGACTTGATCCGGAGCCCTTGCCTCTGATGGACCTGTGTCGCCGCTCCGTCCGAGTGGCTTTAGGGAAGGAGCGATTGAGCGAGATCCACGGGCTCCCCTTGCCAGCCTCCCTAAAGAACTACCTGCTCTACCAATGATGATGGGAGTGCCTGCGCCACAGCAAACGGCCGGGCGCGGCATTCCCTTTGAGCTTCTCCTCTCTGATCCCAATCTGTGTGGGCTTTCTtaccacttttattttatttttttactttttggcTTGGTTTCTTATTTTCACCAACTGTTCCAAATAACAACTTGCTTCAAATAATATACTGgaaatatttatggaaaattTACAGGTCACTTTTTATGGATGTGGAATTAAAGGGTTTTTAGTGGTGCTCTTGCCTGTATTTGAGAAGTGCAATGGTTTTGCTGGAACTCCCCAGCTTTGTTGAACCTCTGTCTTCAGTGGTTCctagatgtatttttattccccCCTTTTTAATGTAAGAATGAAGTTCTCCTTGCAGTGCCACCATTAACTTTCCTGTTAACGAAACTTGGATTTCTTTATGGATATGTTTGCTGTGCATTTAGTGTATGAAAAGGCTAGATTTGACCTTTTGAGACCTAAAATAAACTTCgtattaaatgttgtttttagcCAATTTAATGTTCTAAATGGTATCTTGTAACCTGCCGTCTGGTCTGGACTTTGACTACTAGATCCATTAGTAagattttatgtacattttttttttaatcatgcagcattttcacattttaaaagtatgacATTTATATCTGAGGCTCAAGTAAGGTGATTTAATTGACTCGGATCTTACTTATTTTGCTCTTGTATAGCCTCGTGTAAGAAGATGAGCCGTTCCGCTCCTAGAAGCGCCTACACAAACGGACATTGATTGTCGTGACTTAAAGCAGTTACAGAAGAAATTGCTAATCCCCACTGTTTGCACAGGAAGCAGCTGACTGTCCTGAAAACTAATTTGGTCAGCCACAAAGTTGGAGCCTTGAAAGTTTCAGGTTTTGTGCATGCTGGGAAAATAAACCAAGGGACCAAAATTACCCAATTACTCATTGCATCATTTGAAAAGTGCAATTGTTCATCTGTTTCTAGCAGAAGTATTAAATCACTGTGATTTACACTTGGCATATCCATTAAGAAATCCTAATGCTCGTTTTTGTACCAGCCTTTCAGCAGCCTGAATGAGGTCCCAGGAAGAAACTGCACTCATTTTGCTGCAGTGCAAAAGGGTCTCCTTAGTACTGCCCTTGCACTGGGGTTGGACtggaaaatgttgaaaactTGCTGTATAGGTGGGATGCTCCTGCAGGGTGCCTTGTTAATCGTCCACTGTGTGTTGGGGTAGAAGGCAGGATATGCTGCCATGAGGCATTTTTTGGGGgtaaaataacttttataaATCACTTTAGATGCAgcctttttttactttttatttaaaggacTGCTAGTTTCCGCAGGCAAGGTGGTGGTGCGGGGggagtaatatatatattttttttattttacagattttaaagtGCAAAATCTCCTTGtttttggcattttatttttgataagcATGTGCTCCCAGTACTGCTTAATCACCATATTGaagttagttttgttttcccctttttcaGGCCtgcacagttttatttgtatacaatgCTGTAGATAATGTTCGTAACTACC

Function

symbol description
spsb1 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in brain; gonad; muscle; and otic vesicle. Orthologous to human SPSB1 (splA/ryanodine receptor domain and SOCS box containing 1).

NR:

description
SPRY domain-containing SOCS box protein 1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002282 True 2447 mRNA 0.44 2 10189763 10197544

Neighbor

gene id symbol gene type direction distance location
AMCG00002283 slc25a33,LOC107708828 coding downstream 96660 10079157 ~ 10093103 (-)
AMCG00002285 NA coding downstream 113097 10066912 ~ 10076666 (-)
AMCG00002286 NA coding downstream 159357 10024419 ~ 10030406 (-)
AMCG00002280 NA coding downstream 183192 9977776 ~ 10006571 (-)
AMCG00002277 NA coding downstream 382465 9802308 ~ 9807298 (-)
AMCG00002281 NA coding upstream 27744 10225288 ~ 10239533 (-)
AMCG00002284 NA coding upstream 42548 10240092 ~ 10244785 (-)
AMCG00002292 NA coding upstream 194182 10391726 ~ 10403880 (-)
AMCG00002302 NA coding upstream 558288 10755832 ~ 10789955 (-)
AMCG00002303 NA coding upstream 729324 10926868 ~ 10929003 (-)
G122131 NA non-coding downstream 338387 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 568291 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 902176 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 976334 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 1171436 9018126 ~ 9018327 (-)
G122226 NA non-coding upstream 25669 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 552867 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 614642 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1070020 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1209980 11407524 ~ 11409586 (-)
AMCG00002279 NA other downstream 336688 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 356539 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 388655 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 569636 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 2350352 7826641 ~ 7839411 (-)
AMCG00002288 NA other upstream 72345 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 640260 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1316456 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1450367 11647911 ~ 11685089 (-)
G122597 NA other upstream 1534073 11731617 ~ 11734324 (-)

Expression


Co-expression Network