AMCG00002283 (slc25a33,LOC107708828)


Basic Information

Item Value
gene id AMCG00002283
gene name slc25a33,LOC107708828
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10079157 ~ 10093103 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002283
CTGCGCACTGCGGAATTTCCTGGCGAGAATCAGCCGGCTGGATCCGAGGGCTGCGGGGAGCACGTTTCCCTTCCTTGAAACCTCAAATAATTTCACATAACGATTGAGTATGTTATGATGAAAGCATAAACATGTCGCAGAAAGATACGCTTTTACATCTGTTCGCTGGCGGGTGTGGCGGCACTGTGGGTGCGATTGTGACCTGCCCCCTAGAGGTCATCAAGACTCGTCTGCAGTCGTCCGGCCTCGCCCTGCGGCCTGTCTTCCAGGTCCAGCTGGGAACTCTCAGTGGCACCGGCGTGATCCGCCCCTCGCAGGTCGCCCCCGGGATGTTCCAGGTGCTCAGGTCAATATTAGAGAAAGAAGGACCAAGGTCTCTGTTCAGAGGTTTGGGACCTAATCTTGTGGGAGTGGCGCCATCCAGAGCAATCTACTTCGCTGCCTACTCCAAGTCGAGGGAGAAGTTTAACGCCATATTTGTGCCCAACAGCGGGCCTGTGCACATGTGTTCGGCTGGGTTCGCAGCTTTCGTTACAAACTCCCTGATGAACCCGGTCTGGATGGTTAAGACTAGGATGCAGCTGGAGAGGAGgGTACGAGGGGTGAAACAGATGAACGCCTTGCAGTGCGCCAAGAATGTGTACCAGACAGAGGGGATACGCGGCTTTTACAGAGGCCTCACAGCCTCATACGCCGGCATCTCTGAGACTATGATCTGTTTTCTCATTTATGAGACTCTGAAGAAAAACCTGGCGGATTGCAAGCTAGAATCTGCGAGCGGCCGTAGTGAGAAAGTGGCTTCAGACTTCTTGGGCCTCATGTTGGCGGCAGCTTTCGCCAAAGGATGTGCTTCTTGCATAGCTTACCCACACGAGGTGATCAGGACGAGGCTTCGGGAAGAGGGCAGCAAGTACAAGTATTTTTTCCAGACAGCGCGTCTTGTGTTCATAGAGGAGGGCTACTCAGCTTTCTACAGGGGACTGTCGGCACAGCTTATTAGGCAGATCCCAAACACTGCCATAGTGCTCTCCACCTATGAGCTTATAGTCCATCTACTAGGAAGCCAAACCAAATAGAGCAGCAAGAGGAACCATGAGACTGAGACGAACCAAATTGAAAACAGCATACAGACAAACAGAGCATGGTGTGCATGGAACAGTTGAAAGTGCTTTTGTGGTTTACTGTTGGATTTTGAAGGAGGACCTTTTTCTGAGGATTTCTTGGACATGTACTTGAATTGAgttaatttcatttcaaagttctaaatacaattaaagaggGGAGGGGCTGTGagcaagacagacagacggacagagagagaaaaacaaattggtgttgtttcattgtgttttctcaccatgtttgtgtaaaataaggtactttttatttctgtatcatCCCCGTATCAGTTGACCAGTAAATCGCAACAAGAACACGTACATGTCAACTAAGAAGTATAGTACCGTGATATCAACGAAGATttacttcagtttattttcatacaaatgtaaaatatccaAAGATGATCagtcaagtttttgtttttttaattttatcatGTTCGAATGCTTGCTTGACAAGTCCACAGAAAGGCCTTGAGGTTTGCTGTAAAGGTACTGgtcactgcccacatggcacTGTACAGAGTTGGCTTACCTGCATAGTGTATTATAGTTCTTAGTTCTGCAGGGGTTCTGAAGATCTATGTGTCTGTTTACCATCCGCACCTTCAGTAGAGTGGCTGCAGGGTGGAAATTCACTTTaaattattactactactgctgacTTTGCCACCTGTCctagaatattttatttgattttatttttttggttacGTTTGTCTGTTtaactgtaacatttattttattgtgaatataattatttcgTCTTGTCTTAGGAAATGCgatattgtgtttttcaaaggaATGAGGACCTAAATGCATATTGAAACagtggtttaataaaaaaagaaaaaaaaaaaacactaatacaTGTTAAATGTGTTACTTTTCAGAGTGTGATTCAAAGAAACCAGTGGCCACACAAACAAGAGTAACATTTGCTTTCCTTTGGGGAAATTATCATTACTTCCAGAACACAATCACACTATTACAAgcatttttctccatttaaatatttttcaccacatttttaaacatgtccTTTGTGCCACTTCACTTTGAACAGGTGCTggtgtattattttcttcaacttCTGATGACAATGAGTAAAGATAGAATCCAACACTGGAATTTCCAAGGAAGAAATTGACATCCTAAATGGTAGAGCAAGTAAATGAGTCTTGGTTCCTGTAGTCCTTACGTCTGCTGCATCTCTCATTTCAGATTTCGGATtccttttgattttcttttatcatTGCAGTCCAAATAAAGAAGACTTAGCCAGAGTGGGCCTGCTGTGTGGTGATTTTATAGGGGTGGGGGAACATTTTGCCTGAACGAGAAGACATTTAGGCTGCAATCAAACAATGTTTATTAGCAGGTCATTTGAGAGTCTTACGGCGAACTGTAATGATGGGAATTGGAGCATGGATGGGAATTGGAGGTCAATAGTGtagagatgtattttctttgctgcAAGATTCCCTGAGGGCAGGATGATATCATACAATGGGTACAATAaaggtttctttattattttgtttatctgGGGGCAGTGTGCAATTTGGAATTGTCTGCATTATGGGTGAATCTGGCAGTACATTTCAGTGTATCCCAACACAAAATGTTCTTTCAAGCTGCAGGAACAGAAGGGGTGCTTTGTGCTTTGAAACTTGAGATCTGTATAGTAAAT

Function

symbol description
slc25a33 Predicted to enable pyrimidine nucleotide transmembrane transporter activity. Predicted to be involved in pyrimidine nucleotide import into mitochondrion. Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in margin; myotome; and pharyngeal arch 3-7 skeleton. Orthologous to human SLC25A33 (solute carrier family 25 member 33).

NR:

description
PREDICTED: solute carrier family 25 member 33

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15116 SLC25A33_36, RIM2; solute carrier family 25, member 33/36

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002283 True 2814 mRNA 0.43 7 10079157 10093103

Neighbor

gene id symbol gene type direction distance location
AMCG00002285 NA coding downstream 2491 10066912 ~ 10076666 (-)
AMCG00002286 NA coding downstream 48751 10024419 ~ 10030406 (-)
AMCG00002280 NA coding downstream 72586 9977776 ~ 10006571 (-)
AMCG00002277 NA coding downstream 271859 9802308 ~ 9807298 (-)
AMCG00002268 NA coding downstream 353891 9693760 ~ 9725266 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding upstream 96660 10189763 ~ 10197544 (-)
AMCG00002281 NA coding upstream 132185 10225288 ~ 10239533 (-)
AMCG00002284 NA coding upstream 146989 10240092 ~ 10244785 (-)
AMCG00002292 NA coding upstream 298623 10391726 ~ 10403880 (-)
AMCG00002302 NA coding upstream 662729 10755832 ~ 10789955 (-)
G122131 NA non-coding downstream 227781 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 457685 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 791570 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 865728 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 1060830 9018126 ~ 9018327 (-)
G122226 NA non-coding upstream 130110 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 657308 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 719083 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1174461 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1314421 11407524 ~ 11409586 (-)
AMCG00002279 NA other downstream 226082 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 245933 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 278049 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 459030 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 2239746 7826641 ~ 7839411 (-)
AMCG00002288 NA other upstream 176786 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 744701 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1420897 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1554808 11647911 ~ 11685089 (-)
G122597 NA other upstream 1638514 11731617 ~ 11734324 (-)

Expression


Co-expression Network