AMCG00002288


Basic Information

Item Value
gene id AMCG00002288
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10269889 ~ 10279984 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002288
ATGAATCATCATGAGGGATCAATCCTAATAAAATTAATTCCTGATGAGGATGAACACAACCAGTTGGTCGACAAAGTAGAGGAGTTTGAGGGATTTTCTGGGCTTATTGCCAAACTGAACCTGGTGCTGGAGCACCTTCCCGTGCAGCACCCTCTCCCGGTCGCCCAGCCAAAGTTCCAGGCCCTGGTCCCGACCCCTGCCACCCGTCCAGAGGTCCCGAacccggccgccgccgccgatCCAGAGGTCCCGAACCCGGCCGCCGCCACCGATCCAGAGGTCTCGATCCCAGCCGCCGCCGCTGATCCAGAGGTCTCGATCCAGATCCAGATCCCGGCCGCCGCCGAACCAGTGGTCCAGTTCCAGATCCTGATCCCGGCTGCCGCTGAACCAGTGGTTTACGGTGGACTTCTGCACATAATGAACAATAACCGCTGCCACCTTGAGATGTGTGTGGACTCTTGGCCCGACTTCAGCACTGTCATTTGTCGACGTCAGAAACGGGTCTTGTCAAGTCATCACAAAATGTTGCCCAATCTATGCACGCTGTTTACAAAGGATGTTGCCAGTATGCGGATGATGCTAATGGACGGAGTAATCGACTGCAAAGGGGATATGATAATCTCTGCTGTCCCAAGCTCGTGCTGTGGTCTGATCCAAGAGATCGCCAGCAGCAATGGCATGGAAGTGGAAAATGTCAACATCTGTATTCAAAACAATCCAAAGTATATAGAGTGTGGGAGGAGTGATTTGGCATCAAAGGTTTCCAGTCTGAATGTCTCCCACGCTGAACTGGTGTGCAGCCGCTTTGCCTATGGTGGGAATGAACTAACTCGGAACCACGTGAGGAGCTGCATCCACAACTTCCCCAGCTGCTGCATCCTAGATGAAGGAGGCAACCCCGTCTCCTGGAGTTTGATGGATGAGCTGTACTCAATCAGAATGGCATTCACTCTGCCTGAGTATCGCAAGCAAGGATACATGAAGACCGTCACTGCTGCACttgtaaacaaagcaaattCACTGGGCTTACCAGTCTATTGCCATGTTCTCAATTCAAACACAGCCTCACTCAATGTAGTGAAATGTGTGGGCTTGACCATTTACCCGGAAGAGTATAATGTTTTTGCCCTATTTGTGAGTCCAGAAAACCAACAAGGCAATTAGAGTAACTACAACACGGGACACCTCTCTCTAAATGCTGGTAATTAAGTTATCCTAGTTACTGAAAAATCTCTCCAGTCTGCTATCCCAATCTGTAGTGACCTACATCTAGCCTTAATCTACTGGTGCAGGTATCCTTATTACACTGTAAATCCTCCctgaatacaatgttttttttctttcctgtgcaACACTTTATCTTCCCCCCCCCAGTGCATTTCCTTTG
>TU153264
TGGAGCAGAATCAATGAATCATCATGAGGGATCAATCCTAATAAAATTAATTCCTGATGAGGATGAACACAACCAGTTGGTCGACAAAGTAGAGGAGTTTGAGGGATTTTCTGTAAGTGTAATCACATTATTACAATTGTGATTTACCCCTTTGCAATATTTATAGCTAACTGATTACAGTATGTCATTTTAGGAAAGATTTTGGGCTTTAAAATCAACTGGATTGTGCTAAG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002288 True 1390 mRNA 0.50 6 10269889 10279971
TU153264 False 233 lncRNA 0.34 1 10279752 10279984

Neighbor

gene id symbol gene type direction distance location
AMCG00002284 NA coding downstream 25104 10240092 ~ 10244785 (-)
AMCG00002281 NA coding downstream 30356 10225288 ~ 10239533 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding downstream 72345 10189763 ~ 10197544 (-)
AMCG00002283 slc25a33,LOC107708828 coding downstream 176786 10079157 ~ 10093103 (-)
AMCG00002285 NA coding downstream 193223 10066912 ~ 10076666 (-)
AMCG00002292 NA coding upstream 111742 10391726 ~ 10403880 (-)
AMCG00002302 NA coding upstream 475848 10755832 ~ 10789955 (-)
AMCG00002303 NA coding upstream 646884 10926868 ~ 10929003 (-)
AMCG00002313 NA coding upstream 998442 11278426 ~ 11279133 (-)
AMCG00002312 NA coding upstream 1013110 11293094 ~ 11304845 (-)
G122226 NA non-coding downstream 44907 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 418513 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 648417 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 982302 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 1056460 9138447 ~ 9213429 (-)
G122302 NA non-coding upstream 470427 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 532202 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 987580 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1127540 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 1169582 11449566 ~ 11449791 (-)
AMCG00002279 NA other downstream 416814 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 436665 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 468781 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 649762 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 2430478 7826641 ~ 7839411 (-)
AMCG00002301 NA other upstream 557820 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1234016 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1367927 11647911 ~ 11685089 (-)
G122597 NA other upstream 1451633 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 1568486 11848470 ~ 11854891 (-)

Expression


Co-expression Network