AMCG00002289


Basic Information

Item Value
gene id AMCG00002289
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10384425 ~ 10392661 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002289
gtaaatattattgaaaattcTGATGTCCAAAGTGCATTACAAGCCAGCGGtcaattgattttatttattgttttgtagcAGCTAGCCTAATACAATGGAAGGAGTAACTATCCTGCAAAAATCCACTGAAAGGAAAGGGCAGTTGACTCTGGTCCTGGCTTTGGCAACCCTGATTTCTTCATTTGGATCGTCCTTCCAGTACGGGTACAATGTGGCTGTGATCAACTCTCCTGCTCCGTTTATGCAGCAATTTTATAACCAGACGTACTTTGGTCGCTACGAGAGGCCGGTGGATGACAGCCTGCTCACCTTGCTGTGGTCCCTGACCGTCTCCATGTACCCCCTGGGTGGCTTCTTTGGATCCCTGATGGTTGCCCCACTTGTGAACAAACTGGGGAGGAAGGGGACCCTCCTGTTCAATAACATCTTCTCTATAATCCCTGCTATCCTGATGGGAGCGAGCGAGGCTGCCGGCTCCTACGAGATCATCATCGCCTCACGGTTCCTCGTTGGGATATGCGCAGTGCCTATGTACCTGGGAGAGCTCTCTCCAAAGAGCCTGCGTGGGGCGGTGGGCATCATGCCACAACTCTTCATCACCATCGGCATCCTTGTCGCCCAGGTGTTGGGGATCAGGAGCATTCTGGGCAGCACCAGAGGCTGGCCTCTCTTGCTGGCTCTCACTGGAATCCCCGCAGTCTTTGAGCTCATCTTCCTGCCCTTCTTTCCCGAGAGTCCCCGCTACATGCTGATCCAGAAGGGAGATGAGGAGAACGCCAGGAAAGCTCTGCAGCGGCTGCGTGGCTGGGAGGACGTGGGCGAGGAGCTGGCGGAGATGCGTCTGGAGGACCAGTCGGAGCGCGCAGAGGGACGCCTGTCCGTGCTGAGCCTCTGCTCCTTCCCCTCACTGCGCTGGCAGCTGGTCTCTGTGGTCGCCATGAACATGGGCCAGCAGCTGTCCGGCGTCAACGCGATCTACTACTATGCCGACAGCATTTATGGTTCTGCAGGCGTCCAAGAGGGCAACATACAGTTTGTCACCGTTGGAACAGGGTCTGTGAATGTGGTCATGACGGTGATAGCGGTGTTCATCGTGGAGAAGCTGGGGAGGAAGCTCCTGTTGCTCAGTGGCTTTGGGATCTGCTGTGTTGCATGTGCAGTGCTGACTGTCGCCCTCCGTTTTCAGGAAAGTGTGGAGTGGATGCCCTACCTCAGCATCGCCTGTGTCATCATCTATGTCATTGGCCATGCCATTGGACCCAGTTCTATCCCTTATGTGATTACCACGGAGATGTTCCGCCAGGCCTCTCGTCCTGCCGCCTTCGTCATCGCCGGCTCTGTCCACTGGCTGTCCAACTTCACTGTGGGCCTGGTCTTCCCTTTCCTGGAGAAAGGGCTTGGCCCATACAGCTTCATCATCTTCTCCTTAATTTGCCTGGTCACGCTGGTCTACATTTTCATCGTGGTGCCGGAAACCAAGAACAAGACCTTCCTGGAGATCAGCCAGATGTTCGCAAAGAGGAACAAAGCAGAGATCATCATAGAGCCAGGAGACCTCGGCACGGAGAAGGACCCAACTCTAATGAGCAGTAAACTGGACACCAGACCGGAGGGAATGAAGGTGACCAAATTCTAAGGCGACCTTTGCGTGCCCTCCAGAATCCCACAGATGTCCACGTGTTCCCCCCCGCtgactaataataaaaaatataatagtgACAGGAAACATAAAACTATGCAAGGATAAAGTGGCGGGGGGCTTCGGTATTTAGTCAGGATCGTACCCtggatattttcaaatgagcaACAGCTGCTGGTTTTGATGGAATTGTAATCTTTCATCCTCCTTTGAAACGTATGCAAGATACTGTTCTTGTTGATGTTGTTCTCGAATCATAGACAATTTTCCAGGCGTGTCCTGTAGAGGCTCCAACACTTGCTctgattaatttgtatttgtttttattggaatCGCACTTCTGCCACTAGACCAGGGGTTcacaatgtctggtgatggagggacaatttccggaggttgcattGGATGGGGGGGCCGTAGTACCAAATGaaccacagatgaaaacaaaatatttcccaaattatacctttttatttctgttagggaacatttattaactttaattgttgttttattattttcccccaaattacatttgcaatttataacagaaaatgttcatgaagtgtaaaaatatagtaaaggttcagaaaaagGGTGGTTGAAGgctggctttggggggccgcaccaaacatcctcgggggccacactttgggaacccctctACTAGACAGTTAAATATATAGGCAGTTAATAaccatttaataacacattaaatataGTTGTGTCTATTCTACAGTAAGGTCTTACATTACAACATTTCTGAAGATCTTCAAAAAAagtcttacaaaaaaaaaaacagcaaatagtTTCCTGGAAAAACTCTTATCCACAATCTTGTGGCCATTAGCTGTATTAAATTCCCTTAAATAATAGATTGCtgaaatttaattatttattgtagatATACAGATCTGAATTAGATACAAGTTCTATATTGTTGAACACCATACACGTTACAAATTCACTTACTGCTGCTACTGTGCAGGCCCTGTTTGGAACAGATCCCcagctattaaaaataaatggataaaacaaaaagtagcACACGTAGAAAATTCCCaaagcattgtatttttcttattagactgaatataaaatataatagtttTGGTTAACTTCCATTGTGTGTACAGGTTAACGTGCTCTACCCATCACAGACAGTGCTTTAATGagactaaataaaaaagatgaagTAAACCTCTACAAAGTAGTCACTGGACTCACTGTCTGAACAAGTC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08143 SLC2A5, GLUT5; MFS transporter, SP family, solute carrier family 2 (facilitated glucose/fructose transporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002289 True 2880 mRNA 0.47 12 10384425 10392661

Neighbor

gene id symbol gene type direction distance location
AMCG00002290 NA coding upstream 7663 10366149 ~ 10376762 (+)
AMCG00002287 NA coding upstream 80064 10301307 ~ 10304361 (+)
AMCG00002278 clstn1 coding upstream 412760 9951006 ~ 9971665 (+)
AMCG00002273 NA coding upstream 510331 9873347 ~ 9874094 (+)
AMCG00002274 lzic,LOC107708836,LOC107586557,LOC107718820,LOC107681991,LOC107695771 coding upstream 521336 9853550 ~ 9863089 (+)
AMCG00002291 eno1,LOC107716106,LOC107703060,LOC107591100,LOC104965722,LOC108434336 coding downstream 7000 10399661 ~ 10425473 (+)
AMCG00002293 rere,LOC106906980,LOC104950366,LOC107687412,LOC107593365 coding downstream 64663 10457324 ~ 10541658 (+)
AMCG00002295 rere,rerea,LOC107591099 coding downstream 158006 10550667 ~ 10558464 (+)
AMCG00002297 samd11 coding downstream 275031 10667692 ~ 10670647 (+)
AMCG00002298 NA coding downstream 300402 10693063 ~ 10709309 (+)
G122236 NA non-coding upstream 57774 10323529 ~ 10326651 (+)
G122198 NA non-coding upstream 252225 10079747 ~ 10132200 (+)
G122126 ctnnbip1 non-coding upstream 485545 9862956 ~ 9898880 (+)
G122119 NA non-coding upstream 553747 9829754 ~ 9830678 (+)
G122086 NA non-coding upstream 625364 9693716 ~ 9759061 (+)
G122328 her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146 non-coding downstream 478112 10870773 ~ 10927943 (+)
G122389 NA non-coding downstream 942270 11334931 ~ 11348638 (+)
G122417 NA non-coding downstream 1064983 11457644 ~ 11470525 (+)
G122467 NA non-coding downstream 1129513 11522174 ~ 11522631 (+)
G122468 NA non-coding downstream 1130211 11522872 ~ 11523114 (+)
AMCG00002272 NA other upstream 533113 9844205 ~ 9851312 (+)
AMCG00002245 NA other upstream 1591947 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 2973195 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 3781817 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 5157769 5218830 ~ 5226656 (+)
AMCG00002294 rere other downstream 175251 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 322138 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 964891 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 972953 11365614 ~ 11379568 (+)
G122482 NA other downstream 1236351 11629012 ~ 11630892 (+)

Expression


Co-expression Network