AMCG00002292


Basic Information

Item Value
gene id AMCG00002292
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10391726 ~ 10403880 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002292
ACAACTAAAGCCATGACTGGGTACCTGGgactttttgtgtgttttctcctgCTGGACCCCAGCTGGGAATCAATACAAGGGATACACTGGTCCTACAAAGAGGGGGAAGGTCTGGACCCAATGCACTGGGCAGAGAATTACCCTGAGTGCGGTGGGAGGAGGCAGTCTCCCATCAACATCGAGAGGAGGCATGTCCGGTACAACGCCAAGATGGAGCAGCTGAAGCTGAGCGGCTACGACGGGCCGCAGAGAGGCACCTTCCTCATGACCAACAACGGGCACTCAGTTCAGATCGATCTGCCACCCACCATGGTGATCAGCAAGGGCCTGCCTGCCCGCTACACCGCCGTGCAGATGCACCTGCACTGGGGGGGCATGGACCTGGAGGCCAGCGGTGCTGAGCACACGGTGGACGGCATTCGGTACATGGCTGAGctgCACGTTGTTCACTACAACTCAGACAAATACAAAAGCTTTGCTGAAGCTGTAGACAAACCCGATGGACTAGCCGTGCTGGCTTTCTTCTATGAGGACGGGCATTTTGAGAACACTTACTACAGTGATTTCATTTCCAACCTGAAGTATGTGAAGTATACAGGCCAATCCATGAACATCAGTTCGGTGAATGTGCGGGCCATGCTCCCAGAGAACTTGTCCCATTTCTTCCGGTACCAGGGCTCTCTCACCACCCCACCCTGCTACGAGAGCATCTTGTGGACAGTCTTCGACACCCCTATTACTCTGTCCCACAGCCAGATAATGAAGCTAGAGAGCACCCTGATGGACCCGGAAAACCAGACCCTGTGGAATGACTACAGGGTGGCGCAGTCGCTGAATGACCGCGTGGTGGAGTCCTCTTTCCTGCCGAGGCTTGGCATAGGCGcGTTTTGTCGGCAAGAAGAAATTGAGACCAAATTATTGAAGATAGAGGGAATGCTGGACTCCTTCGGAAAGCAGATTCGGGAAGCCCAGAGCATGCTGTCCCCACTGGTGTTCCAGTTCCCGGAGAGGAACACAAAGAGCTACGTCCAGGTGCACCGTACACACAGCCTGGCTCTGTCCTCCTTCACCGTGTGCGCCCACATCAAGATCCAGATCCCCAGCGTGCACACCATCCTGTCCTACTCCAGCGCTGTCCATGACAATGAGCTCATGATCACAGCCGGCTACGAGGTGGGGCTGTGGCTGGGCAACGAGTTTATCAGCTTCCCCCACACCTTCCGCTCCCAGGACTGGGATAACTACTGCATGACCTGGGCCTCCCACTCGGGTGGCGCAGAGCTGTGGATCAATGGCATGGTGAGCGAGGAGCAGTACATGAAGCGGGGCTACACTATCAGGGCGGGGGGCACCCTTATCCTAGGCAAGGACCAGGATGGCCTGCTGGGCATTTCTGACGAGGACGCCTTCGTGGGCCACATGACCGACGTCAACATGTGGGACTATGTGCTTGGCTCCTCTGAGATCCGGGAGCAGATGCAGTGCAGCAACAACACCCAGAAGGGCAATGTGCTCGCCTGGGGGAGGACGCCTGTCAGCCTGTACGGAGGGGTGAGACTGGAGACCGACTACAGGTGTCCCTAATCGGGATGCCCTGGAAACAGGCGCTTGCAGGCCCTGCCCCCTACATCCAGTGCCGCCCACTGCACTGTGACATCACAATAGTGTGCCGCAATCCTACTAAGGGGGTTACACACCAGACCCTAGCTATTGCCACAGTTCCCATTCAGCGCTGCCTAGAAGCTTAGCTCAGAGACCGCTGGATCGAGTCTAATGCAGCTTTTAAAGGGAGctgtagcaaaataaataaaaaagtaaacaggATCTCTTGATCAGACCTGCTCTCCAGACCTATGACTAATATGACTTGTTCAGACAGTGAGTCCAGTGACTACTTTGTAGAGGTTTActtcatcttttttatttagtctCATTAAAGCACTGTCTGTGATGGGTAGAGCACGTTAACCTGTACACACAATGGAAGTTAACCAaaactattatattttatattcagtctaataagaaaaatacaatgctttGGGAATTTTCTACGTGTgctactttttgttttatccatttatttttaatagctgGGGATCTGTTCCAAACAGGGCCTGCACAGTAGCAGCAGTAAGTGAATTTGTAACGTGTATGGTGTTCAACAATATAGAACTTGTATCTAATTCAGATCTGTATatctacaataaataattaaatttcaGCAATCTATTATTTAAGGGAATTTAATACAGCTAATGGCCACAAGATTGTGGATAAGAGTTTTTCCAGGAAactatttgctgtttttttttttgtaagactTTTTTTGAAGATCTTCAGAAATGTTGTAATGTAAGACCTTACTGTAGAATAGACACAACtatatttaatgtgttattaaatggtTATTAACTGCCTATATATTTAACTGTCTAGTagaggggttcccaaagtgtggcccccgaggatgtttggtgcggccccccaaagccagcCTTCAACCACCctttttctgaacctttactatatttttacacttcatgaacattttctgttataaattgcaaatgtaatttgggggaaaataataaaacaacaattaaagttaataaatgttccctaacagaaataaaaaggtataatctgtggttCATTTGGTACTACGGCCCCCCCATCCaatgcaacctccggaaattgtccctccatcaccagacattgtgAACCCCTGGTCTAGTGGCAGAAGTGCGattccaataaaaacaaatacaaattaat

Function

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002292 True 2778 mRNA 0.49 10 10391726 10403880

Neighbor

gene id symbol gene type direction distance location
AMCG00002284 NA coding downstream 146941 10240092 ~ 10244785 (-)
AMCG00002281 NA coding downstream 152193 10225288 ~ 10239533 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding downstream 194182 10189763 ~ 10197544 (-)
AMCG00002283 slc25a33,LOC107708828 coding downstream 298623 10079157 ~ 10093103 (-)
AMCG00002285 NA coding downstream 315060 10066912 ~ 10076666 (-)
AMCG00002302 NA coding upstream 351952 10755832 ~ 10789955 (-)
AMCG00002303 NA coding upstream 522988 10926868 ~ 10929003 (-)
AMCG00002313 NA coding upstream 874546 11278426 ~ 11279133 (-)
AMCG00002312 NA coding upstream 889214 11293094 ~ 11304845 (-)
AMCG00002315 NA coding upstream 1055183 11459063 ~ 11467699 (-)
G122226 NA non-coding downstream 166744 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 540350 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 770254 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 1104139 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 1178297 9138447 ~ 9213429 (-)
G122302 NA non-coding upstream 346531 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 408306 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 863684 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1003644 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 1045686 11449566 ~ 11449791 (-)
AMCG00002288 NA other downstream 111742 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 538651 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 558502 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 590618 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 771599 9608750 ~ 9620127 (-)
AMCG00002301 NA other upstream 433924 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1110120 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1244031 11647911 ~ 11685089 (-)
G122597 NA other upstream 1327737 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 1444590 11848470 ~ 11854891 (-)

Expression


Co-expression Network