AMCG00002293 (rere,LOC106906980,LOC104950366,LOC107687412,LOC107593365)
Chromosome Information
Item |
Value |
chromosome id |
CM030136.1 |
NCBI id |
CM030136.1
|
chromosome length |
27394605 |
location |
10457324 ~ 10541658 (+) |
genome version |
AmiCal1_2021_bowfin_Genome |
Sequence
>AMCG00002293
ATGCCCTTCCTGTGCTACAGAGAGACCAagTGTCGTTCTGTTTCAGTGCTTGTTAGCATTTGGAGAGGCGGTGTTGGAGTGTCTAAAGAGTTGAATGCAGTCAAGTACTACTACTCTTACCACCAGCACTACTACCGCCACTTAATCCCACGGCAGGCCACGGAGGACACTTTCTGGCACCGGCGCTCTGTAGCAAGTGGGCCAGAGAAGAGGGAGCACAAAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACGGAGGAAGGCACGTGGCGTATCATGACGGCCGATAAAGAGAAGGacaaagagaaggagaaggacagagacagggacagagaccgGGACAAGAGAGACAAGATGCGGGAGACCGAGAGCTCCCGTCCGCGACGCAGCTGCACCCTGGAGGGCGGCGCCAAGAACTACGCAGAGAGCGACCACAGTGAGGATGAGGACAACGACAACACTGGCACCACCGCCGAGGAGGCCACCAAGAAGAGCAAGAAGAAGCCGCCCAAGAAGAAGTCCCGCTACGAGCGCACAGAGAACGGAGAGATCACCTCCTTCATCACCGAGGACGATGTTGTGTACAGGCCCGGCGattGTGTATATATTGAGAGTCGCCGTCCAAACACTCCTTATTTCATTTGTAGCATTCAAGATTTCAAGCTGAGGGTCACCTTGAGCGATGAGACGGAGGATCTAACCTGCTCGGCCTGCAAGGCCAGTTACAGGGGCCGTCAGCTGCAGCCGAGTAAACGGGACCACCTGCTTATGAGTGTGAAATGGTACTACCGCCAGTCAGAAGTACCAGACTCGGTGTACCAGCACCTGGTCCAGGATCGCAACAATGAAAACGACTCTGGCCGGGAGCTCGTCATTACTGACCCGGTGGTCAAGAGCCGGGAACTGTTCATTTCAGATTATGTGGACACGTACCACGCTGCTGCTCTTAGGCAAGTCATATGCTGCGGTGAAACGCATCGTGGCGACTGGTGCAGACGGGAGACagggaaatgtaacatttcccatttttctgacatttttgcTGCAAGGGAGTTTAAAGCCCGCATTGACTCATTTTTCTACATACTTGGATACAATCCCGAGACCAGTACTTTTATCATCTGCAGTGAGGGCAGGTCAGAGGGATTTGAGTGA
Function
symbol |
description |
rere
|
Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin remodeling and nervous system development. Part of nucleus.
|
NR:
description |
PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X3 |
GO:
id |
name |
namespace |
GO:0006355
|
regulation of transcription, DNA-templated |
biological_process |
GO:0051216
|
cartilage development |
biological_process |
GO:0048839
|
inner ear development |
biological_process |
GO:0031063
|
regulation of histone deacetylation |
biological_process |
GO:0040036
|
regulation of fibroblast growth factor receptor signaling pathway |
biological_process |
GO:0060037
|
pharyngeal system development |
biological_process |
GO:0043565
|
sequence-specific DNA binding |
molecular_function |
GO:0003682
|
chromatin binding |
molecular_function |
GO:0003700
|
DNA-binding transcription factor activity |
molecular_function |
GO:0008270
|
zinc ion binding |
molecular_function |
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
AMCG00002293 |
True |
1179 |
mRNA |
0.54 |
12 |
10457324 |
10541658 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
AMCG00002291 |
eno1,LOC107716106,LOC107703060,LOC107591100,LOC104965722,LOC108434336
|
coding |
upstream |
31851 |
10399661 ~ 10425473 (+) |
AMCG00002289 |
NA
|
coding |
upstream |
64663 |
10384425 ~ 10392661 (+) |
AMCG00002290 |
NA
|
coding |
upstream |
80562 |
10366149 ~ 10376762 (+) |
AMCG00002287 |
NA
|
coding |
upstream |
152963 |
10301307 ~ 10304361 (+) |
AMCG00002278 |
clstn1
|
coding |
upstream |
485659 |
9951006 ~ 9971665 (+) |
AMCG00002295 |
rere,rerea,LOC107591099
|
coding |
downstream |
9009 |
10550667 ~ 10558464 (+) |
AMCG00002297 |
samd11
|
coding |
downstream |
126034 |
10667692 ~ 10670647 (+) |
AMCG00002298 |
NA
|
coding |
downstream |
151405 |
10693063 ~ 10709309 (+) |
AMCG00002299 |
klhl17,LOC106572137,LOC107737556,LOC107572648,LOC107687417
|
coding |
downstream |
248718 |
10790376 ~ 10813875 (+) |
AMCG00002300 |
NA
|
coding |
downstream |
278587 |
10820245 ~ 10834811 (+) |
G122236 |
NA
|
non-coding |
upstream |
130673 |
10323529 ~ 10326651 (+) |
G122198 |
NA
|
non-coding |
upstream |
325124 |
10079747 ~ 10132200 (+) |
G122126 |
ctnnbip1
|
non-coding |
upstream |
558444 |
9862956 ~ 9898880 (+) |
G122119 |
NA
|
non-coding |
upstream |
626646 |
9829754 ~ 9830678 (+) |
G122086 |
NA
|
non-coding |
upstream |
698263 |
9693716 ~ 9759061 (+) |
G122328 |
her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146
|
non-coding |
downstream |
329115 |
10870773 ~ 10927943 (+) |
G122389 |
NA
|
non-coding |
downstream |
793273 |
11334931 ~ 11348638 (+) |
G122417 |
NA
|
non-coding |
downstream |
915986 |
11457644 ~ 11470525 (+) |
G122467 |
NA
|
non-coding |
downstream |
980516 |
11522174 ~ 11522631 (+) |
G122468 |
NA
|
non-coding |
downstream |
981214 |
11522872 ~ 11523114 (+) |
AMCG00002272 |
NA
|
other |
upstream |
606012 |
9844205 ~ 9851312 (+) |
AMCG00002245 |
NA
|
other |
upstream |
1664846 |
8738771 ~ 8792478 (+) |
AMCG00002215 |
NA
|
other |
upstream |
3046094 |
7393800 ~ 7411230 (+) |
AMCG00002190 |
acot7
|
other |
upstream |
3854716 |
6586654 ~ 6602608 (+) |
AMCG00002152 |
NA
|
other |
upstream |
5230668 |
5218830 ~ 5226656 (+) |
AMCG00002294 |
rere
|
other |
downstream |
26254 |
10567912 ~ 10604839 (+) |
AMCG00002296 |
NA
|
other |
downstream |
173141 |
10714799 ~ 10753893 (+) |
AMCG00002310 |
NA
|
other |
downstream |
815894 |
11357552 ~ 11359840 (+) |
AMCG00002311 |
ttll10
|
other |
downstream |
823956 |
11365614 ~ 11379568 (+) |
G122482 |
NA
|
other |
downstream |
1087354 |
11629012 ~ 11630892 (+) |
Expression
Homologous
species |
gene id |
symbol |
gene type |
chromosome |
NCBI id |
location |
rainbow trout (Oncorhynchus mykiss) |
rerea |
LOC107737560
|
misc |
NC_048573.1 |
CM023227.2 |
72716129 ~ 73026771 (+) |