AMCG00002293 (rere,LOC106906980,LOC104950366,LOC107687412,LOC107593365)



Basic Information


Item Value
gene id AMCG00002293
gene name rere,LOC106906980,LOC104950366,LOC107687412,LOC107593365
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10457324 ~ 10541658 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00002293
ATGCCCTTCCTGTGCTACAGAGAGACCAagTGTCGTTCTGTTTCAGTGCTTGTTAGCATTTGGAGAGGCGGTGTTGGAGTGTCTAAAGAGTTGAATGCAGTCAAGTACTACTACTCTTACCACCAGCACTACTACCGCCACTTAATCCCACGGCAGGCCACGGAGGACACTTTCTGGCACCGGCGCTCTGTAGCAAGTGGGCCAGAGAAGAGGGAGCACAAAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACGGAGGAAGGCACGTGGCGTATCATGACGGCCGATAAAGAGAAGGacaaagagaaggagaaggacagagacagggacagagaccgGGACAAGAGAGACAAGATGCGGGAGACCGAGAGCTCCCGTCCGCGACGCAGCTGCACCCTGGAGGGCGGCGCCAAGAACTACGCAGAGAGCGACCACAGTGAGGATGAGGACAACGACAACACTGGCACCACCGCCGAGGAGGCCACCAAGAAGAGCAAGAAGAAGCCGCCCAAGAAGAAGTCCCGCTACGAGCGCACAGAGAACGGAGAGATCACCTCCTTCATCACCGAGGACGATGTTGTGTACAGGCCCGGCGattGTGTATATATTGAGAGTCGCCGTCCAAACACTCCTTATTTCATTTGTAGCATTCAAGATTTCAAGCTGAGGGTCACCTTGAGCGATGAGACGGAGGATCTAACCTGCTCGGCCTGCAAGGCCAGTTACAGGGGCCGTCAGCTGCAGCCGAGTAAACGGGACCACCTGCTTATGAGTGTGAAATGGTACTACCGCCAGTCAGAAGTACCAGACTCGGTGTACCAGCACCTGGTCCAGGATCGCAACAATGAAAACGACTCTGGCCGGGAGCTCGTCATTACTGACCCGGTGGTCAAGAGCCGGGAACTGTTCATTTCAGATTATGTGGACACGTACCACGCTGCTGCTCTTAGGCAAGTCATATGCTGCGGTGAAACGCATCGTGGCGACTGGTGCAGACGGGAGACagggaaatgtaacatttcccatttttctgacatttttgcTGCAAGGGAGTTTAAAGCCCGCATTGACTCATTTTTCTACATACTTGGATACAATCCCGAGACCAGTACTTTTATCATCTGCAGTGAGGGCAGGTCAGAGGGATTTGAGTGA

Function


symbol description
rere Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin remodeling and nervous system development. Part of nucleus.

NR:

description
PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051216 cartilage development biological_process
GO:0048839 inner ear development biological_process
GO:0031063 regulation of histone deacetylation biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0060037 pharyngeal system development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00002293 True 1179 mRNA 0.54 12 10457324 10541658

Neighbor


gene id symbol gene type direction distance location
AMCG00002291 eno1,LOC107716106,LOC107703060,LOC107591100,LOC104965722,LOC108434336 coding upstream 31851 10399661 ~ 10425473 (+)
AMCG00002289 NA coding upstream 64663 10384425 ~ 10392661 (+)
AMCG00002290 NA coding upstream 80562 10366149 ~ 10376762 (+)
AMCG00002287 NA coding upstream 152963 10301307 ~ 10304361 (+)
AMCG00002278 clstn1 coding upstream 485659 9951006 ~ 9971665 (+)
AMCG00002295 rere,rerea,LOC107591099 coding downstream 9009 10550667 ~ 10558464 (+)
AMCG00002297 samd11 coding downstream 126034 10667692 ~ 10670647 (+)
AMCG00002298 NA coding downstream 151405 10693063 ~ 10709309 (+)
AMCG00002299 klhl17,LOC106572137,LOC107737556,LOC107572648,LOC107687417 coding downstream 248718 10790376 ~ 10813875 (+)
AMCG00002300 NA coding downstream 278587 10820245 ~ 10834811 (+)
G122236 NA non-coding upstream 130673 10323529 ~ 10326651 (+)
G122198 NA non-coding upstream 325124 10079747 ~ 10132200 (+)
G122126 ctnnbip1 non-coding upstream 558444 9862956 ~ 9898880 (+)
G122119 NA non-coding upstream 626646 9829754 ~ 9830678 (+)
G122086 NA non-coding upstream 698263 9693716 ~ 9759061 (+)
G122328 her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146 non-coding downstream 329115 10870773 ~ 10927943 (+)
G122389 NA non-coding downstream 793273 11334931 ~ 11348638 (+)
G122417 NA non-coding downstream 915986 11457644 ~ 11470525 (+)
G122467 NA non-coding downstream 980516 11522174 ~ 11522631 (+)
G122468 NA non-coding downstream 981214 11522872 ~ 11523114 (+)
AMCG00002272 NA other upstream 606012 9844205 ~ 9851312 (+)
AMCG00002245 NA other upstream 1664846 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 3046094 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 3854716 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 5230668 5218830 ~ 5226656 (+)
AMCG00002294 rere other downstream 26254 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 173141 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 815894 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 823956 11365614 ~ 11379568 (+)
G122482 NA other downstream 1087354 11629012 ~ 11630892 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) rerea LOC107737560 misc NC_048573.1 CM023227.2 72716129 ~ 73026771 (+)