AMCG00002301


Basic Information

Item Value
gene id AMCG00002301
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10837804 ~ 10847201 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002301
ATGGATGATTTCGACTACAGTGTCCACATATCCGAGCAGGACTGGGATTCCTTCTTCCTGGAGTGTGAGGAGTGCGATCTCTCCCAGCCTGAGCTGGCAGGGTTAGACGACTCCTGCCTGAGTGATGTTGATGAACCAGTGCTGGAGCCTCCATCCAGCGGCTGGGGGGCACAAGCCCAACTTCAGCCGTTCTCACTAGAGACTGAACTGCCCCACTTCTCCATTTTCAGCCCTGTAGACTTCTCAGGGTCTCCCCTTGAGCTAGCCCATCCCTACCTCAGCAGTAGGTATGACACTGGTGCTCTGGAAGATGTCCTGTCGGGCAGTGAGGAGGAGGTGGACCTAGAATCAGTCAACAGGTTTATGGAGAAGCTGAAGACCTTAGCTGGTGGGGAGCAGCCTTCAGTACACAGCAAGGCCTGCCTGGGGACCCAGGTCGGCTTGACAGATGCGTCTTGTCCTGAAACAGCCAGAGAGACATGGCTGCAAGGGGGCGCCTGTGTCTCACCAGGCAAGATTTCCactggcacagagagagaggctttgCTAACAATGTGGTCTGGGTCAGTGTTTCTGCAGGATAATAGCACAGACCGCAAAGAACCTGCCCAAACTGATGTGTCACGGAAACACACAGGAAGGGCAACAGTTCAGTGTGGGGATGTGCATGGATTATTCAGTGAGTTAGGCATCTGCAAACAAGTGACTGCAAGTAGTAAGCATGGGGATGAACGAAATGAACAGTCAGGGGAAGATTCTGGATTCTCTGACACCCCCAGGGAGTATACAGTACAGGAAGAGAAATGGACTACTGGACTGACGAGGAGTGAGTTTCTGGTGACAGTCCAGGAGGTGCAAGACACACCAGAGAGCCTTTTAAAGGATGGACCTGCAGGAAAAGCTTTTGGATCCTTAAGCACATGCAGTAAGGTAGTGTGTGGAACCATCGATGGAGAGATGCAAGAACAGCAGTATTGTGTGAGGCAGACTGTCATTGAGAGTGCAGAGGAAACTATAATTTCTGCAAGAGAAATGGCAGAGATTGCAGGAGATCAGCCTACGGAGGGGAAGGGGGCTATGCTCTGTGTCCTTGACCAGGACTCACCAAGGGGCTCTGAAGAGCTGCCAGGACAAGAAATCAGTGGGAAATCACCAAGCAAGAGACAGGGAACTGGGTCTTTAAGCATGGACTATTGTCAGGCAGGCACCAAAGAGGATTTTTCAAATTCCTTAAAAGAACATCCAAACCCAACTGGAATACCTGCTGTCAGTGGGGATGGGGAGTGTTCCTCAGCAACTGGAATGGTGCAAGAGCTGGCCAGCCAGCCAGCAGCCTCTGTATCAGCAGGAACAGCGGACCAAGGGGGGTGGGAGGCTCCTAATGTACTAAAACAAGAAATAGCTAAAGAGAGGGTCAACTTACACCAGCAGACTTCTCCCAGGGATTTTGCTTTGGCAGGCAGAGAGTCTGCTTCAGAGTGTTGCAGCTCCGCAGTCCTGCCTGTACCTGCATGGTCACCCCTTACTGACTACAGCAGCGGTTGCAAAGATCAGCGCCATCCAACAGAGGCAGAGCAGTCACTCAGAGAGAGCCTTGCAACACTCCAGCATGAAGATGTCTCTAGCCTTTGGCAAATGGAGAATGGGCACGGTGGATCGGCACATGCAGAAGATGGCAAAACTGAACGACATTTGGCATACCTGTGCATCGACAATGCGGATGAGGCGTGTGTGAGCACTGAGACAAGGGAATCAGAGTCTCTTCACCCCACCGCACTGAACGTGCAGCCAGACAGCCCACTTGATACTGTGACCATTGTGCGTGTTGGGTCGGGAGTAGTGGCTGTAGCAGATCCGCTGGGTCAGCTGAAATCACTTTATAACACAGTCTCAGGATGCACCGTCAGTGCGATAGATGAGCCACATAACACAGCCCCTGTCCTTCCCTCAAGTTCTGAAGTAGCTGAAGAAAGCTCTGCCCATTTGGCCACGAGTGACAGCTCATACGCGATGTCCGGCCACTCTGCTGCAAGGCTCCCCACACCTGAACAGGAGAGCAGGACAGAGTGTCACACAGACCAAAGCCTGCTCTTAATAAGCGAGGAAACAGCGCCGGCTGAGAGTTGTGATCTCTTCGGTGCTGCAGTGCTCCGCGACTCTGCATGGCCTCAAAACACTCCGGCTGTAGCTGACAATAACACCCAGAAGGACTCTTTGCTGCAGCTAGAATTCAGAACAGAGGGATTACCTCCCGGAGACAGTTTGCCGACAGGAGATCCTCACCAGGATCAGGCACAGCAGATTGTCCTGGAGCGCTGTGTGCCAGATGAGCTTGAACACAGTCACGATGCCATGGCTTGCGCTTTAGTAACAAACAGtgaaagcaaaagcaaagcCTTGGATTGCATGCAGCCGCTTAACGCCCCCCAAGTTCACGTGATCTCAGATTTCTGGGAAGAAATGGAGAAGTTGACGATCAACGACATTTTATACATCAAGCTGATGGACAGTGGCCAGCAGCCCCAGGGCCCCTTCCTTCACGACGCCACCATGACAGACGTCTCGGACACCTCTGACTCTGGCTACTTCACACACCTGGAGGACTCACCTGACAAGCCTGACCTGTCCAGTGGAAATGATATCTCCATGTTTTCGGATTTCGAGGAGTTCTCCCAAACACAGGACTCCAGCACCGACCCCACCCTAGAGCCCCAGGACACTCCTGTGCAGACCAGCATGCAAGAGCTTTCATACCATAAAGGGGAGGTGTGGGAGGGTGAATCTGGGGAGATCCCCTCCATCTCCAGGTCTGAAGCTCCTTGTTTCCCAGGCAGCACCAGAACGAAGGGCATCAAGAAGATATACAAGAACCCCTATTTCTCACCTGCAGCCGCAACGGAGAGCTACATGATTTCTGTACCTGAGATTTTCGAGTACTTGTTCGATGTGCAGGGAGCGACGGGTTCCGGCGTGTCTTTTGCCAACGAAGACGTGAGCAAGAAGTCCATTCCCGAGATGTATGACTATTTCTTTTCCGAATTTGAGACAGAGAGTTTTTTCTTCCCTATCATCCAGGGATCAGAAAGTGACCAGAACGAGCCTATTCCaatcttctcctcttcctcctgctccgaTAAAGTTCTCCCGGTGCCGGAGGTGTATGATAGTTTTTTTGAAGGTGTTCCTGAAGCTGGAGTGGAGGACCAGGAAGACAGCGGGCCAATCCGCGTGGTGACACGTGTCGATCATTGCACCAGTACCCCCTCTGCCGTCTCTGGCCCTGACGCTTATGAGCACTTCTTCACTGACAGGGACCTGGACCAGAGCTTTTTCTGGAGAAACCTCATGTCTCTGAGAGGGAGACGCTTCCTGAGACGGACGGAAGGCACTGGGGATGGCCACCAATCCTCGTCTTCAGCAGCGGAGGACGGGAAGAAGGGATCTGTCTGCAGGAAAAAGGGTCCAGCCAAAGGCTGGGAGAAACGAGATGATGACTGCCCACCGATGGCACTCAGCTTCCTGAAAGAGCAGATTCTGAGACACCTGGAGGAGCAAGGGAAGAGAGGCACAGATTCTAGGACAGCGCTTGCCATGCCAAGAAAAGAGAGTTTTCTGCTGTCGGTGAACCAGTCTGATATGTGTTTAGTCTGCATTGCTTTTGCATCCTGGGTGCTGAAGTCATCTAATCCACAAGCTGCAGATGCCTGGAAAGCAGCTTTATTGGCAAACGTCAGCGCTATCTCAGCCATACGATACCTGAGAAGGTATGTCAAGAAGGGCAAGCCAGCAGATGTGCCGTGAAATGAACCTCTGCAAACCATCCCACCGGCAAGAACAGCTACCAGGATGTGCCAGCTGGCTCTCTGGGACTAGGCCTTAGTTTTAACCCAGAAGAAAAAATGATGCATACTGTGTTtggaaggaaatatttaaatcgATGTAAATAATATTAGATGAGAGTGAAATCCCATTGTTCCGGTGTTGTaatttaaagtatctgtgaTAATAGAAGCCATGGATAACACAGTGTTGCTGGATGTTTGTAGACTTCTAGTTCCTGTACATAAAATATGATCTTGCCATCACagagtaaaacaacaacaacatgaaaaaacagAGGTAAATAAATCTGGAATACCATGTGTATAACAGCAGTGTATACATGAACTGAGCTTTGAATATCCCAACAAATCTAATGTATAAAaattgtaaaacacacacacaa
>TU153396
CTCCGTGTGACCAGAAACTCTGCTCTATTTATAACAAAGTCAATGGGACGGCTTCACTTTATTGGGCCGAAGGACAGGCTGTGGAGGACACAGCTTGCCGTGTGTCTCCAATGCTGCAGGGCTGCGGATCAGGGAAAAGAGAGTTTTCTGCTGTCGGTGAACCAGTCTGATATGTGTTTAGTCTGCATTGCTTTTGCATCCTGGGTGCTGAAGTCATCTAATCCACAAGCTGCAGATGCCTGGAAAGCAGCTTTATTGGCAAACGTCAGCGCTATCTCAGCCATACGATACCTGAGAAGGTATGTCAAGAAGGGCAAGCCAGCAGATGTGCCGTGAAATGAACCTCTGCAAACCATCCCACCGGCAAGAACAGCTACCAGGATGTGCCAGCTGGCTCTCTGGGACTAGGCCTTAGTTTTAACCCAGAAGAAAAAATGATGCATACTGTGTTtggaaggaaatatttaaatcgATGTAAATAATATTAGATGAGAGTGAAATCCCATTGTTCCGGTGTTGTaatttaaagtatctgtgaTAATAGAAGCCATGGATAACACAGTGTTGCTGGATGTTTGTAGACTTCTAGTTCCTGTACATAAAATATGATCTTGCCATCACagagtaaaacaacaacaacatgaaaaaacagAGGTAAATAAATCTGGAATACCATGTGTATAACAGCAGTGTATACATGAACTGAGCTTTGAATATCCCAACAAATCTAATGTATAAAaattgtaaaacacacacacaaatatatatatatatatatatacatatttttttcttatacagGGAATGGTATGTGTTCACAGAATAAGTAGGTGTGTCTTGATTGTAAAGTGTGTGGCAAGGGAGTGAGACCCAGGCTAGGCCGGGGATCCAGGTGTGCAGCCCAGCTTTCTTCAAACCCAGTTCCTTGAGGGCCTGGGGTGTCTTcgggttttcattccacctgtgATCTTACGTTCGTAATCGAACCAAATTATTCACTTAAGGGCACCTGTATGTATCCCCTATCCCAGGTGTATGGCAGGCGACCATATAAAGAAACCTGTCTATATAACCTGCTGGACTGTGGCCCTGGAGGACTGGAATCATAGAATTCTGGTGTGTGTATGGATTTATCTGAaggtttcttttaaaaataaaataaagaaagaaagaatctTGAGGGAAGGGGTTTGAAGTCTTGAGCTGAACTGAAGTCATGGAAGTGGAGGTGAGGGAATTTTAGTGTCTTCTCAGCCCCTGGTCCCAGAGGACTGCTGTGTAATTtgggtttttgttccagctgactTATTGAAAAAGGTCCAATTAAGCAATGATGGTTTAATTTAGGgttcaatttaataattaagagTCCTGCTGGAACAAGAACCCACCCCTTCACCTCTATGCATCACTTCAGGGTAAGAcactctgctgtttttattaaatgggTCCAATTGATTTTTCAAACAAGGTGTCAAAATTAGGTAAACTTACCGTAATTAATTAGATATGAAATAAGTGGCTGAGATCTATGCTATGGTACattgtagatttattttcacccatttattgtgttaaaatgctaagtatatatataaactgaacatgaaggaagaaagaaagaaagaaagaaagagaaaagcgtgtgaaaatatctaaaatattttaaaaaactgcaGCAGCTTTAGTGTATCAGTGAGTGACTCATAGATGCTTTTTtatctcaattaattaatctatttttctttgtatatgAGTGTCTAGAAATGTGATGGatgttgtgttgattttgtgaaatgtaatgtgttacAGTGtccaataaaacagacaaaccata

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0061061 muscle structure development biological_process
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002301 True 4225 mRNA 0.51 4 10838915 10845984
TU153396 False 1837 lncRNA 0.39 4 10837804 10847201

Neighbor

gene id symbol gene type direction distance location
AMCG00002302 NA coding downstream 47849 10755832 ~ 10789955 (-)
AMCG00002292 NA coding downstream 433924 10391726 ~ 10403880 (-)
AMCG00002284 NA coding downstream 593019 10240092 ~ 10244785 (-)
AMCG00002281 NA coding downstream 598271 10225288 ~ 10239533 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding downstream 640260 10189763 ~ 10197544 (-)
AMCG00002303 NA coding upstream 79667 10926868 ~ 10929003 (-)
AMCG00002313 NA coding upstream 431225 11278426 ~ 11279133 (-)
AMCG00002312 NA coding upstream 445893 11293094 ~ 11304845 (-)
AMCG00002315 NA coding upstream 611862 11459063 ~ 11467699 (-)
AMCG00002319 NA coding upstream 637558 11484759 ~ 11505246 (-)
G122319 NA non-coding downstream 23928 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 87023 10750411 ~ 10750781 (-)
G122226 NA non-coding downstream 612822 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 986428 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 1216332 9621028 ~ 9621472 (-)
G122376 NA non-coding upstream 420363 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 560323 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 602365 11449566 ~ 11449791 (-)
G122530 NA non-coding upstream 754771 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 867208 11714409 ~ 11716145 (-)
AMCG00002288 NA other downstream 557820 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 984729 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1004580 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1036696 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 1217677 9608750 ~ 9620127 (-)
AMCG00002317 plekhm2 other upstream 666799 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 800710 11647911 ~ 11685089 (-)
G122597 NA other upstream 884416 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 1001269 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 1022406 11869607 ~ 11872862 (-)

Expression


Co-expression Network