AMCG00002307 (LOC105898973,LOC106572187,LOC103032744)


Basic Information

Item Value
gene id AMCG00002307
gene name LOC105898973,LOC106572187,LOC103032744
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11255732 ~ 11271329 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002307
GAATGACCATGGCAGGTGTTTCTCGTGTCTTCCAGGCGCAATGATGAAGTCACCCACATTAAGATCCAGAACTCGGGGGACTACTACGACCTGTACGGGGGCGAGAAGTTTGCCACCTTGGCCGAGCTGGTGCAGTACTACACTGAGCAGCATGACCTGCTGCGGGAGAAGAACGGCGACGTCATCGAGCTCAAGTACCCCCTGAACTGCAAGGACCCGACGTCAGAGAGATGGTATCATGGGCACCTGTCGGGCAAAGACGCGGAGAAGCTGCTGACGGACAAGGGCAAGCCAGGCAGCTTCCTGGTGCGAGAGAGCCAGAGCAAACCAGGGGACTTCGTGCTGTCAGTGCTGACCAATGAGGAGAAGCACGAGAACGTGGACCGCAAGACCAAGGTCACGCATGTCATGATCCGCTACCAAGACGGGAAGTATGACGTGGGAGGCGGCGAGCGGTTTGACACCCTCACGGACCTGGTGGAGCACTACAAGAAGAACCCCATGGTGGAGAAGAATGGCATCGTCGTGCACCTCAAGCAGCCGTTCAATGCCACAAGGATAAACGCGGCCAACATTGAGAACAGAGTGAAGGAGCTGAACAAAGTGGCTGACAACTCTGAGAAAGCCAAGCAGGGCTTCTGGGAGGAGTTTGAGATGTTGCAGCAGCAGGAGTGTAAGCTGCTGTACCCCCGGAAAGAGGGGCAGAGGCCTGAAAACAAGAGCAAGAACAGATACAAGAACATCCTGCCATTCGATACCACCCGCGTGGAACTGAGGGAGGTGGACACGGAGGTTCCTGGTTCTGATTACATCAACGCCAACTACATTCGGaGTGTGCAGGAGGAGGGGCGGCATGCAGACGAGTGCAAGGTGTACATCGCCACGCAGGGCTGCCTGCAGAACACCGTCGTCGACTTCTGGAAGATGGTGTACCAGGAAAACACTCACGTCATCGTAATGACAACCAAGGAAATGGAGAGGGGACGGAACAAGTGCGTGCGCTACTGGCCGGATATCAACTCCACCAAAGAGTTCGGGAATCTGTGTGTGCGGAACATAGAGGAGAGGCCGGCTCAGGACTACATACTGCGAGAGCTGGAGATCAAGCGGCTGGACAGGAACGAGAACCCCCGGTATATCTGGCACTATCAGTACCTGAGCTGGCCGGACCATGGCGTTCCCAACGAGCCGGGGGGGGTCCTGAGCTTCCTGGACCAGGTGAACCGTGCCCAGAATGGCATTCCAGAGACCGGGCCTATCGTTGTGCACTGCAGTGCAGGAATTGGAAGGACAGGAACCATCATTGTAATTGACATTCTCATAGACATCATTAACAGACAAGGGCTGGACTGCGACATAGACATCCCGAAAACCATCCAGATGGTCAGGAGGCAGCGGTCGGGGATGGTGCAGACGGAGGCACAGTATAAATTCATCTACATGGCCGTGCAGCAGTACATAGACACCGTGCAGAAAAGGCTCGAGGAAGAGCAAAGGAATAAAACGAAGGAGAGGGAGTATTCCAACATCAGATATCCACCCACGGAGAACGCCAAGCTGAAGCCCAGCACACCCACCTCTCGCTCCTCTTCTCTGGTCAACGACGACTCCACAGGCGTGTACGAGAACTTAAACATCAGACACCCCAAGACCGCCGGGATCAGCAACACCAGGAGATAGGGGCCGGGGCAGGAGTCCTTCAGAGTCGAGACATTTGTGAGCAGGGAGATGAGTTTTCAGTGGAGCTGACTGTGAAGATCCCCTGAGACGCACGGCGACATGCAGGCACAGCCAGCGgcacgggg

Function

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002307 True 1805 mRNA 0.56 14 11255732 11271329

Neighbor

gene id symbol gene type direction distance location
AMCG00002309 NA coding upstream 10752 11214084 ~ 11244980 (+)
AMCG00002308 NA coding upstream 53731 11144009 ~ 11202001 (+)
AMCG00002306 NA coding upstream 115045 11127459 ~ 11140687 (+)
AMCG00002305 NA coding upstream 153728 11097491 ~ 11102004 (+)
AMCG00002304 agrn coding upstream 260021 10992509 ~ 10995711 (+)
AMCG00002314 NA coding downstream 121626 11392955 ~ 11406464 (+)
AMCG00002316 NA coding downstream 293680 11565009 ~ 11587894 (+)
AMCG00002323 NA coding downstream 330881 11602210 ~ 11612235 (+)
AMCG00002325 NA coding downstream 352452 11623781 ~ 11628341 (+)
AMCG00002324 zbtb17 coding downstream 365484 11636813 ~ 11644784 (+)
G122328 her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146 non-coding upstream 327789 10870773 ~ 10927943 (+)
G122236 NA non-coding upstream 929081 10323529 ~ 10326651 (+)
G122198 NA non-coding upstream 1123532 10079747 ~ 10132200 (+)
G122126 ctnnbip1 non-coding upstream 1356852 9862956 ~ 9898880 (+)
G122119 NA non-coding upstream 1425054 9829754 ~ 9830678 (+)
G122389 NA non-coding downstream 63602 11334931 ~ 11348638 (+)
G122417 NA non-coding downstream 186315 11457644 ~ 11470525 (+)
G122467 NA non-coding downstream 250845 11522174 ~ 11522631 (+)
G122468 NA non-coding downstream 251543 11522872 ~ 11523114 (+)
G122469 NA non-coding downstream 251898 11523227 ~ 11523622 (+)
AMCG00002296 NA other upstream 501839 10714799 ~ 10753893 (+)
AMCG00002294 rere other upstream 650893 10567912 ~ 10604839 (+)
AMCG00002272 NA other upstream 1404420 9844205 ~ 9851312 (+)
AMCG00002245 NA other upstream 2463254 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 3844502 7393800 ~ 7411230 (+)
AMCG00002310 NA other downstream 86223 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 94285 11365614 ~ 11379568 (+)
G122482 NA other downstream 357683 11629012 ~ 11630892 (+)
AMCG00002331 NA other downstream 417271 11688600 ~ 11694165 (+)
AMCG00002339 NA other downstream 439121 11710450 ~ 11715372 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_08365139_08380569 PTPN11B coding CI01000001 null 8364229 ~ 8380694 (+)