AMCG00002312


Basic Information

Item Value
gene id AMCG00002312
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11293094 ~ 11304845 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002312
tgcagatctgtgcacagTCTGCGCTACAAGGAGGCGACCTGTGTGATCGGCATCTGTGCTGCGTGTTGTGATCCTGACTCCACTGTTTTCTCTGCGTAGCGTAAAGGGTCTTTCCGACGGCTATGGCTGGCTGCtccaccacctccaccaccatcaccatcatcaccatcatcatcgcCGGAGCCGCGCTTCAAGTTGTTCGTCAAACTTCACAATCCCCGGTCTCCCTTCCGGACCATCTTCAGTGTTGTCTAGATGCACAGGAAGAGAATGGGACGTGCCAAAACAGCACCCAGTGTGACCCTGGCTGCTTTCTGCAGACGTTCAAGACCAGTGCCGCTTTCTGTGTCCGGTGCAGGACTGACTACCTCCTGCTATACAACCTGACGGACTGCAACCACACAGATTATCTCAATGCAACTGTACAATCGGCCAACACGAGCACAGTGGCACCAGTGCAGCCCAAAATCGGTGGGCCCGGAGTTGCTGCCTCTCTGCTACTGGGAACCCTCTTCATCAGCCTCTTCCTCATCCTCTCCGTGGCTTCCTTCTTCTACCTCAAACGCTCCAACAAACTTCCCAATGTTTTCTATAGGAGGAACAAAGcCTCTATATTTCAACCCAGTGAAACGGCTGTGATGATCCCTACACCATCTTCCTCCGTACGGAAGCCAAGATATGTACGAAGGGAGAGGCCTGTGACTGCAGCCACTGTCTCCACTGCCGCCGTCACACACATCAGCAACGTATGAGGGAGTCGCTGTGCTGCTTTGGCCTGAGATGTGCCAACAGAATATTGTGGAGAGGAATCAGGTGTGGAGGAGGGAGACGCAAAAatctttgtaaaaatgtaaagagaaGGGTCTGAGCTCAGTACACAGTCTGCTTTGATCACTGTAGGAGCCTGTGCTTTTCTTCTCCGCAGTCTGTTTGCAGTGCAGTTCCCCCTGATGCACATTTACCCTGGTAAATTTACCATTggttttttgcactttttttatGGCTGTTCCATAGTTTTACACTGGCCTCCTGTGACTTTGTAATGCCGCCACTCTGCCTCGCCAAATTCAACCATGAATAAACCCTACCACAGTACACAAGCCTAGATTATATTTAACACGGTCAGTCATGGTGTTCCCAGAGTCCTGTGTAGGCTTTTGAACTCATAGGAAACCAGTCAATGGTTATGGTTAAACTGCAGttaaaccatgttaaaagtgcagAAATCCTGCGGTAAATGTTCCAGGGTAACTTTGCACAAGGGGACGCTGCTGGCTGAGAGTTTAGTCTCACAACACAGGTGATGTTATGGGTTCAAGGGGCAGTGAACTGTCTGTGTTGGCatgttatttttggttttgtttgttatttgtgtccGTGTTTTCGGCAGCCTGTAAGCTCTGTGATCCTGTTTTTTCTGAGTTTACGGACTCAGCCTTGACTTGCCAAGGACTCTCCAGACAGCTTGAATCTATCTTTATCCTGTGCCTGGGGGAGAAAGTGGCAGCACCATCCCTTTCTTCTATGTGTCTCTTCTAAAATAAGCAGTTTGTTCAGCTTAACCTTCCGGGGGAGGAATAAACGAGGAAGTAAACGTCAGTATTTATGGAATCTAGgatataaatgaaatgaaatggatTATGTCATCTACCAAGAACTATGCATTTGAATGTTAGCAGGACCTGATTTTAAACAGATCTGAAACTCTGAATCTTAGGGGTACAATACAACAACCCAACATCACCCTGATGGTACCTTCAACCACTGTTCCATAGTGCTAACTCGGTAAGAAGCTGTACCAAACTAGCATTTGTATACTGAAGAGCAAtcaatacagcacagtaaatCTAGTGCTTGGCAGGGAAAAAAGTATCCGAACCGATGGAATGAATGTTATTCAGCAtttaagaaactaaacaaaaactaaaaaatgctTCTTCCTGCCTGTTGCACTTATTAACTCGCAACAGAAAGAGATGCATATCCCATGCTGGTTCTccttaaatgaaaatatatttttttggtttgtttttaattatataattgaattgaatattttttcatatgtCCAAATGTCAACCAAATGAGCCAATCAGATGTGCCAAttgtaaaaagacaaaaaagtatttaatgtgtTGTACAGAATATGTGTGGGTAGCAGCGCAGAGCTGGGGTAGATGGAGACGCTAAAAGCCTATGGGTGCAGTAGCAGCAGCTGAGCCCCGAAGTCGGGAGATTCCCAATTGAATTCTGGGCTTTGCCACTGTGGGTAGGGGGGCAAGTCATGTCTTGCCATTTGCAATAGGTGATCATATTGTGGAGGGGTGAGGCTTCTCTGCACTGGTCACAAGATGGAAGTTGCACTTTAATTGGCAACTGTATGCATTGGGGAAGTGAGAAATGAGTGTGCTGTGTTGCCTAGTGATGTTTaggattattatatttgtacattttagacTTGCTGTGTCTGTGGCAGGTTAGCGCTGAGTTCAGCAGCAGTGCTTGAATGTCCGAGAGCACGCACGCTCATATACCACTGCCCTGAGGACAAATGAAGGACTCGCTGGCGAAATGTCTGTTGTCGCTTTATCCAAATCTTCCCATAtgaattcaaatgtgttttcttaaaCGATCACAGTCCTCTGACTTGcgacacacttgcacacagacgcacacaagCATTTGAAAAAAGAAACCGCAGAGAACTTGCCACCACTTTTATTCGTGTACTTAGTCTTTTATTACTCACAGTGCAGCAGTAAGGACTTCGCTCTAGTGATCGTGTTGTTGCGGGGGCTGGGGTGGGGTTGTCATGTATACTGTGCTACAGGGACTGATTTAGGATATTGTTCTTCAAATCCAGACCTTCAGAGACACGATCCTGGCAGCTATGGTTCGGCTTTTGAAAGCAGGAGAAAAGGGATTTCCTGAGTTTCATGAAgggattaatttattgattCTGTTAACTACTTAGGATAAGCACTGTGGCCCTAGAGGACTTGCTCTGAAGGACCCTGGGTTAGGTGATGATATAGAAATGATGTGCTCTGTACATATAAATAGAAGAAAGCCCAAGTGCTCTGCTCCCGTATTTCCCTGACTGCACGATGACTGCACTGTGCCTTTTGGGAATGCTGACTCATTGGGCACCGTTAGGACTTGCCACAGTATCGGGCACCTCTGTGTGTTTTGCAAGATACCGTAATCATATCTGCTCAAAGGCTTTCATCAAGAaatggttttatgttttgtgttgttttttctggaaGGGTTGTCATTTAATGATCTTCTGGGTCTTCGGTTTCAGTAAATTTTTCTGTGTGTACACTATCACCAAAGTGTTAACGAACTTTTGTAAACAATTCTCAGAGCTCCGAGCCTCTACATTCCCATGCTCTGAACTGTGAAAGAATAGGTGGTAGTGGTgtttttcaaaaaggaaaaaaaaaaactaggaggtatacatttaattttacaatagagctattttgtattgttgttaaaGTCTGCATAGCTGCCCAAGAAATTGTGAAGCATGAAAGAATCTGAGCGATACTGTGTCCTGAAACACAATATTTCATGCTCTTGATATGTTCGCTGTTATACAGCCAATGAAAGTGtaatttttgtatataatgtttttatacaaataatgtatttaacatcttttgtattcatatttttaccaATTAttgccaaatattttttttctttttgtttcgagtcgacaaaataaacactatgTGAAGAACAAAcaatgcttttcaaaacaaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002312 True 3778 mRNA 0.44 8 11293094 11304845

Neighbor

gene id symbol gene type direction distance location
AMCG00002313 NA coding downstream 13961 11278426 ~ 11279133 (-)
AMCG00002303 NA coding downstream 364091 10926868 ~ 10929003 (-)
AMCG00002302 NA coding downstream 503139 10755832 ~ 10789955 (-)
AMCG00002292 NA coding downstream 889214 10391726 ~ 10403880 (-)
AMCG00002284 NA coding downstream 1048309 10240092 ~ 10244785 (-)
AMCG00002315 NA coding upstream 154218 11459063 ~ 11467699 (-)
AMCG00002319 NA coding upstream 179914 11484759 ~ 11505246 (-)
AMCG00002318 NA coding upstream 201030 11505875 ~ 11509991 (-)
AMCG00002322 NA coding upstream 226433 11531278 ~ 11532015 (-)
AMCG00002321 LOC106582762 coding upstream 228705 11533550 ~ 11541279 (-)
G122376 NA non-coding downstream 18567 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 479218 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 542313 10750411 ~ 10750781 (-)
G122226 NA non-coding downstream 1068112 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 1441718 9848235 ~ 9851376 (-)
G122432 NA non-coding upstream 102679 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 144721 11449566 ~ 11449791 (-)
G122530 NA non-coding upstream 297127 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 409564 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 413685 11718530 ~ 11718969 (-)
AMCG00002301 NA other downstream 445893 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1013110 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1440019 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1459870 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1491986 9757425 ~ 9801108 (-)
AMCG00002317 plekhm2 other upstream 209155 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 343066 11647911 ~ 11685089 (-)
G122597 NA other upstream 426772 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 543625 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 564762 11869607 ~ 11872862 (-)

Expression


Co-expression Network