AMCG00002315


Basic Information

Item Value
gene id AMCG00002315
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11459063 ~ 11467699 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002315
TGCTAAGCagcttctttttctctctctcagctctcaTGTGTCCGGATGCCATGTTGCCCGGATATGGATTTCCTCCTCTCCCAGACTTCCAGCCCCACCTGCAAGCGTTCCCCTACAGAAGAGAGAGTGTTGACATGTGGATCCCTGGCTCACCTGAGTCCCCGGCCCGGGGCGAGGGCCTGAAGGACGGGTCGTTCCCCCGGCACCACCATATCGCTGTGTGCAAGCAAGAGACACTCACCTTCATCGAGCTGCCCGCCCTTCCCCCTGAGCCCACTGGGGGGCACCGCTCCCCTTCCCTGGACAGACAAGGGCCCTGTTTTGACATCCCCGAGGAATGGCCGAATGCACCGGCGAGCTGGTCCGACCCCAGGGTCCCGATGGAGGTGCAGCGCGGAGGCTGTGGCAGCGGGGGTGACCCATGCTGGTCCCTCTCACTGGCCTCCACGGAGTCCGAGggcctccctgccccccccggCCGGCCACCCTTGtccctctccctgcccctcAGCCCCCTCCCGCCGCCCACAGACAGAGACTCgtacccctcctcctctcccacctCCTCCCTGGGCTCTGGTCTGCGCAGTCCTGAGCTGTGCCGGCCGCAGAGGCGACCCTCACAGGGATCGGTTAAGGAGAAGAATGCCCGGCGCAAGATGCGTGTTTACTCCCCGGAGAGCCTGAGTGACGAGTCTCTGAGCAGCCCCAGCCTGGAGTGCGAGTACCTGTTCCCCGGGCCCttcctggaggaggagctgggaCCGccgccctgccctgccctgccacTGGAGGGAGCCGGAGACAACAGCAGCACTGGTGTGGAGAGCGAGCTGCCTGCCCCGGAGGACAGAGAGTCAGGGCTAGAGAGCCTCGACAGCGCAGAGGAGATGGGTGGCCCCGGGTCACGGGGGTTCCCTGGGGTCGTGGTGGAGCAGGAGCGGCGGCGTTTCTCGGCCTCGGAGCTGATCAGCCGGCTACAGCTGTCCCAGCGGAAGAGCTCCTTCACTCTGAAGCTGGGCAAGTCTCTGTCCGCCCGCGTGACCCACAGCAGCAATGGCAGCAAGGACCGCCCCCACCCGCTCCGCAGCCTCAGCCCCGACAGTAAGCACAGCTCCAGAGACCGCAGCTCTGCAGGGTCCATAGACAGCGCCCCTCACAGCCCCATGGGCCCAGGCCCACCGCTGCCCTCTGGTGACAGCGCCTCAATACTGCAGCGACGGAGCTCCAGGCCAAGTTTCAGGAGGGActctgtggaggaggggggCATGTGCACCCCCGCCTCCTTCAGCTGCACCAAGCGTCTCTCCAGATTCCTGCCCAACTTGGACCACTTCATGCTGTCCCGGGAGCTGTCGGACTGTCTGGGCACTCAGGAGAGACAGTGGCTCTTTTCCAAACTGCCCGAAGTGAAGGACGTGAGCGAGAGgtgggaagaggaggaggaggaggagaggcCCCTGCGCCGTGTCTACCTGCCCTACGTCACCAACCAGGCTTACCAGGAGCAGACCTACCAGCGCCTGCTGCATGAGAACCCTCGATTCCCAGGGATCCTGGCACGACTGGAGGAGGACCCAGTGTGTCAACGCCTGCCCCTCACCTCCTTCCTCATCCTCCCCTTCCAGAGGATCACTCGCCTTAAAATGCTGGTGGAGAACATCCTGAAGCGCACGGCGCCCGGCTCCCGGGACGAGGACACGGCAACCAAGGCCTTCAATGAGCTGAAGAAGCTGATCAAGGAGTGTAACTCCAGCGTGCAGTCCATGAAGAGGACCGAGGAGCTCATCCACCTCAACAAGAAAATTCATTTTGAGAGCAAGATCTTCCCCCTGATCTCTCAGTCCCGCTGGCTAGTGAAGCACGGTGAGCTGCTGGAGGTGGACACGCAGAGCATGAGCATATCCGGGACAAAGTTCAAGCTGCCCACGCGCCCTGTCTACCTGCACCTCTTCAACGACTGCCTGCTGCTGTCACGGAAGAAAGAGGCTGTGTACCAGGGCCATGAGGCGGCACTTCTGCCTGCTCCCCGCCCCCGCTCCCTGCGCAGCACCTGGAAGTTTGCGGTGTTTGTGCACGCCAAGATCGGGCAGCTGAAGGTCAAGGATTTGAGCCAGAAGGTGCAGGGCTTCTCAGGATACATCTTCCACCTGCAGCTCTGTGACGGACCCCAGCTAAAGCACCAGATCCTGCTGAAGGCACACACAGAGAGCGAAAAGCAGCGGTGGATTACAGCCATGCTCCCCCCGGACCCCGAGGGCAGTAGGGAGCAGATCAGTGAGAATGAAGACCGCTCCCAGGTGCAGTGCATTAAGAGCTACAAGGCCCAGGAGCACGATGAGCTCACGCTGGAGAAGGCCGACATCCTCCAGGTCAAGACCCTCACGAGCGACGGCTGGGTGGAGGGGATCAGGCTGTCTGACGGCGAGAGGGGCTGGTTCCCACAGAGCTACGTGGAGGAGATCACGAGTCGCAGCGCCCGGTTACGCAACCTCCGTGAGAACAACCGCATCAAGTGTGCCACACAGAAGCTGGAGGAGGAGTATCTGTAGtgcacagagctgcagcacCCTCCTGTGGCTGGACTGTACAACTGCATGACAGCACAGAAAGACACCAACCCTGCCACtctgccaacacacacacacacacacacacacacacacacgcacgcacacacacacacacacacacacacacacacacacacacactgtctcacacactcccacacatcCTGGCA

Function

GO:      GO:0005089,GO:0032319

KEGG:

id description
K20691 ARHGEF19, WGEF; Rho guanine nucleotide exchange factor 19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002315 True 2743 mRNA 0.62 14 11459063 11467699

Neighbor

gene id symbol gene type direction distance location
AMCG00002312 NA coding downstream 154218 11293094 ~ 11304845 (-)
AMCG00002313 NA coding downstream 179930 11278426 ~ 11279133 (-)
AMCG00002303 NA coding downstream 530060 10926868 ~ 10929003 (-)
AMCG00002302 NA coding downstream 669108 10755832 ~ 10789955 (-)
AMCG00002292 NA coding downstream 1055183 10391726 ~ 10403880 (-)
AMCG00002319 NA coding upstream 17060 11484759 ~ 11505246 (-)
AMCG00002318 NA coding upstream 38176 11505875 ~ 11509991 (-)
AMCG00002322 NA coding upstream 63579 11531278 ~ 11532015 (-)
AMCG00002321 LOC106582762 coding upstream 65851 11533550 ~ 11541279 (-)
AMCG00002320 NA coding upstream 74992 11542691 ~ 11546457 (-)
G122438 NA non-coding downstream 9272 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 49477 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 184536 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 645187 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 708282 10750411 ~ 10750781 (-)
G122530 NA non-coding upstream 134273 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 246710 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 250831 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 376693 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 379382 11847081 ~ 11848192 (-)
AMCG00002301 NA other downstream 611862 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1179079 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1605988 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1625839 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1657955 9757425 ~ 9801108 (-)
AMCG00002317 plekhm2 other upstream 46301 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 180212 11647911 ~ 11685089 (-)
G122597 NA other upstream 263918 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 380771 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 401908 11869607 ~ 11872862 (-)

Expression


Co-expression Network